Files in BIGr
Breeding Insight Genomics Functions for Polyploid and Diploid Species
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/madc2vcf_all.R
R/dosage2vcf.R
R/dosage_ratios.R
R/flip_dosage.R
R/relationship_qc.R
R/thinSNP.R
R/calculate_Het.R
R/merge_MADCs.R
R/filterMADC.R
R/imputation_concordance.R
R/filterVCF.R
R/updog2vcf.R
R/check_ped.R
R/breedtools_functions.R
R/get_countsMADC.R
R/calculate_MAF.R
R/madc2gmat.R
R/utils.R
R/madc2vcf_targets.R
inst/test_ref.txt
inst/iris_DArT_Allele_Dose_Report.csv
inst/check_ped_test.txt
inst/ref_ids.txt
inst/iris_DArT_VCF.vcf.gz
inst/iris_DArT_Counts_small.csv
inst/example_MADC_to_merge.csv
inst/imputation_reference.txt
inst/iris_DArT_MADC.csv
inst/REFERENCES.bib
inst/imputation_test.txt
inst/test_test.txt
inst/example_SNPs_DArTag-probe-design_f180bp.botloci
inst/example_MADC_FixedAlleleID.csv
inst/CITATION
inst/iris_DArT_Counts.csv
inst/imputation_ignore.txt
inst/WORDLIST
inst/example_allele_db.fa
inst/iris_DArT_Allele_Dose_Report_small.csv
inst/extdata/iris-multidog.rdata
tests/testthat.R
tests/testthat/test-check_ped.R
tests/testthat/test-breedtools_poly.R
tests/testthat/test-imputation_concordance.R
tests/testthat/test-madc2vcf_targets.R
tests/testthat/test-relationship_qc.R
tests/testthat/test-calculate_MAF.R
tests/testthat/test-calculate_Het.R
tests/testthat/test-thinSNP.R
tests/testthat/test-madc2vcf_all.R
tests/testthat/test-dosage_ratios.R
tests/testthat/test-flip_dosage.R
tests/testthat/test-dosage2vcf.R
tests/testthat/test-filterVCF.R
tests/testthat/test-updog2vcf.R
tests/testthat/test-get_countsMADC.R
tests/testthat/test-merge_MADCs.R
tests/testthat/test-filterMADC.R
tests/testthat/test-madc2gmat.R
man/check_homozygous_trios.Rd
man/check_ped.Rd
man/madc2vcf_targets.Rd
man/updog2vcf.Rd
man/allele_freq_poly.Rd
man/calculate_Het.Rd
man/get_countsMADC.Rd
man/check_replicates.Rd
man/calculate_MAF.Rd
man/filterMADC.Rd
man/imputation_concordance.Rd
man/dosage_ratios.Rd
man/madc2gmat.Rd
man/madc2vcf_all.Rd
man/merge_MADCs.Rd
man/dosage2vcf.Rd
man/thinSNP.Rd
man/filterVCF.Rd
man/solve_composition_poly.Rd
man/flip_dosage.Rd
