BMRV: Bayesian Models for Rare Variant Association Analysis

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Provides two Bayesian models for detecting the association between rare genetic variants and a trait that can be continuous, ordinal or binary. Bayesian latent variable collapsing model (BLVCM) detects interaction effect and is dedicated to twin design while it can also be applied to independent samples. Hierarchical Bayesian multiple regression model (HBMR) incorporates genotype uncertainty information and can be applied to either independent or family samples. Furthermore, it deals with continuous, binary and ordinal traits.

Author
Liang He
Date of publication
2016-11-01 11:07:18
Maintainer
Liang He <liang.he@duke.edu>
License
GPL (>= 2)
Version
1.32

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Man pages

blvcm
Bayesian latent variable collapsing model (BLVCM)
blvcm_bin
Bayesian latent variable collapsing model (BLVCM) for binary...
blvcm_bin_data
Example data for BLVCM_bin
blvcm_data
Example data for BLVCM
BMRV-package
Bayesian models for rare variant association analysis
hbmr
Hierarchical Bayesian multiple regression model incorporating...
hbmr_bin
Hierarchical Bayesian multiple regression model incorporating...
hbmr_bin_data
Example data for hbmr_bin
hbmr_data
Example data for HBMR
hbmr_ord
Hierarchical Bayesian multiple regression model incorporating...

Files in this package

BMRV
BMRV/src
BMRV/src/RInterface.cc
BMRV/src/paper_3.h
BMRV/src/paper_2.h
BMRV/src/paper_3.cc
BMRV/src/paper_2.cc
BMRV/NAMESPACE
BMRV/data
BMRV/data/hbmr_data.rda
BMRV/data/blvcm_bin_data.rda
BMRV/data/blvcm_data.rda
BMRV/data/hbmr_bin_data.rda
BMRV/R
BMRV/R/hbmr.R
BMRV/R/hbmr_bin.R
BMRV/R/hbmr_ord.R
BMRV/R/blvcm_bin.R
BMRV/R/hbmr_check.R
BMRV/R/blvcm.R
BMRV/MD5
BMRV/DESCRIPTION
BMRV/man
BMRV/man/hbmr_data.Rd
BMRV/man/hbmr_bin_data.Rd
BMRV/man/blvcm.Rd
BMRV/man/blvcm_data.Rd
BMRV/man/hbmr_ord.Rd
BMRV/man/hbmr_bin.Rd
BMRV/man/blvcm_bin.Rd
BMRV/man/BMRV-package.Rd
BMRV/man/blvcm_bin_data.Rd
BMRV/man/hbmr.Rd