BMRV: Bayesian Models for Rare Variant Association Analysis
Version 1.32

Provides two Bayesian models for detecting the association between rare genetic variants and a trait that can be continuous, ordinal or binary. Bayesian latent variable collapsing model (BLVCM) detects interaction effect and is dedicated to twin design while it can also be applied to independent samples. Hierarchical Bayesian multiple regression model (HBMR) incorporates genotype uncertainty information and can be applied to either independent or family samples. Furthermore, it deals with continuous, binary and ordinal traits.

Browse man pages Browse package API and functions Browse package files

AuthorLiang He
Date of publication2016-11-01 11:07:18
MaintainerLiang He <liang.he@duke.edu>
LicenseGPL (>= 2)
Version1.32
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("BMRV")

Man pages

blvcm: Bayesian latent variable collapsing model (BLVCM)
blvcm_bin: Bayesian latent variable collapsing model (BLVCM) for binary...
blvcm_bin_data: Example data for BLVCM_bin
blvcm_data: Example data for BLVCM
BMRV-package: Bayesian models for rare variant association analysis
hbmr: Hierarchical Bayesian multiple regression model incorporating...
hbmr_bin: Hierarchical Bayesian multiple regression model incorporating...
hbmr_bin_data: Example data for hbmr_bin
hbmr_data: Example data for HBMR
hbmr_ord: Hierarchical Bayesian multiple regression model incorporating...

Functions

BMRV Man page
BMRV-package Man page
blvcm Man page Source code
blvcm_bin Man page Source code
blvcm_bin_data Man page
blvcm_data Man page
hbmr Man page Source code
hbmr_bin Man page Source code
hbmr_bin_data Man page
hbmr_check Source code
hbmr_data Man page
hbmr_ord Man page Source code

Files

src
src/RInterface.cc
src/paper_3.h
src/paper_2.h
src/paper_3.cc
src/paper_2.cc
NAMESPACE
data
data/hbmr_data.rda
data/blvcm_bin_data.rda
data/blvcm_data.rda
data/hbmr_bin_data.rda
R
R/hbmr.R
R/hbmr_bin.R
R/hbmr_ord.R
R/blvcm_bin.R
R/hbmr_check.R
R/blvcm.R
MD5
DESCRIPTION
man
man/hbmr_data.Rd
man/hbmr_bin_data.Rd
man/blvcm.Rd
man/blvcm_data.Rd
man/hbmr_ord.Rd
man/hbmr_bin.Rd
man/blvcm_bin.Rd
man/BMRV-package.Rd
man/blvcm_bin_data.Rd
man/hbmr.Rd
BMRV documentation built on May 19, 2017, 2:28 p.m.