scale_counts: Normalize OTU counts and add a pseudo count
In BRACoD.R: BRACoD: Bayesian Regression Analysis of Compositional Data
scale_counts R Documentation
Normalize OTU counts and add a pseudo count
Description
BRACoD requires relative abundance and cannot handle zeros, so this function
adds a small pseudo count (1/10th the smallest non-zero value).
Usage
scale_counts(df_counts)
Arguments
df_counts
A dataframe of OTU counts. Samples are rows and bacteria are columns.
Value
a dataframe of relative abundance data
BRACoD.R documentation built on March 24, 2022, 5:05 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| scale_counts | R Documentation |
Normalize OTU counts and add a pseudo count
Description
BRACoD requires relative abundance and cannot handle zeros, so this function adds a small pseudo count (1/10th the smallest non-zero value).
Usage
scale_counts(df_counts)
Arguments
df_counts |
A dataframe of OTU counts. Samples are rows and bacteria are columns. |
Value
a dataframe of relative abundance data
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.