score | R Documentation |
This calculate the precision, recall and F1 of your BRACoD results if you know the ground truth, ie. if this is simulated data.
score(taxon_identified, taxon_actual)
taxon_identified |
a list of integers corresponding to the indicies of the taxon you identified with BRACoD |
taxon_actual |
a list of integers corresponding to the indicies of the taxon that truely contribute to butyrate levels |
a list containing 1) the precision 2) the recall 3) the f1 metric
## Not run: df_summary <- summarize_trace(trace, colnames(sim_relab)) taxon_identified <- df_summary$taxon taxon_actual <- which(contributions != 0) r <- score(taxon_identified, taxon_actual) precision <- r[[1]] recall <- r[[2]] f1 <- r[[3]] print(sprintf("Precision: %.2f, Recall: %.2f, F1: %.2f",precision, recall, f1)) ## End(Not run)
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