BRugs: Interface to the 'OpenBUGS' MCMC Software
Version 0.8-6

Fully-interactive R interface to the 'OpenBUGS' software for Bayesian analysis using MCMC sampling. Runs natively and stably in 32-bit R under Windows. Versions running on Linux and on 64-bit R under Windows are in "beta" status and less efficient.

Browse man pages Browse package API and functions Browse package files

AuthorOpenBUGS was developed by Andrew Thomas, Dave Lunn, David Spiegelhalter and Nicky Best. R interface developed by Uwe Ligges, Sibylle Sturtz, Andrew Gelman, Gregor Gorjanc and Chris Jackson. Linux port and most recent developments by Chris Jackson.
Date of publication2015-12-16 09:36:46
MaintainerUwe Ligges <ligges@statistik.tu-dortmund.de>
LicenseGPL-2
Version0.8-6
URL http://www.openbugs.net/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("BRugs")

Man pages

bgr.point: Internal functions (to support plotting the Gelman-Rubin...
BRugs: Introduction to BRugs
BRugsFit: BRugs' meta function
buffer: Reading OpenBUGS buffer file
bugs.data: Writing input for OpenBUGS
bugs.inits: Writing input for OpenBUGS
buildMCMC: Generating mcmc.list objects for package coda
dic: DIC
dimensions: Dimension of BUGS variables
get.chain: Current chain to be initialized
get.num.chains: Number of chains
help.WinBUGS: WinBUGS documentation
info.memory: Show memory usage
info.modules: Loaded modules
info.node: Node information
info.updaters: Information on MCMC updaters
model.adaptivePhase: Getting length of adaptive phase
model.check: Checking the model file
model.compile: Compiling the model
model.data: Loading the data
model.factory: Enable and disable factories to create updaters
model.gen.inits: Generating initial values
model.inits: Loading initial values
model.iteration: Returns number of iterations
model.names: Get variable names in model
model.precision: Setting precision for prec figures
model.RN: State of Random Number Generator
model.save.state: Save the model's current state
model.setAP: Changing settings of updating algorithms
model.setWD: Set working directory
model.update: Updating the model
plot.autoC: Plot autocorrelation function for a scalar variable
plot.bgr: Plot the Gelman-Rubin convergence statistic for a scalar...
plot.density: Plot density estimate or histogram of a scalar variable
plot.history: Trace of a scalar variable
ranks: Calculation of ranks
rats: ratsdata example
samples.autoC: Plot autocorrelation function
samples.bgr: Plot the Gelman-Rubin convergence statistic
samples.clear: Clear recorded values
samples.coda: Writing files in CODA format
samples.correl: Correlation
samples.density: Plot density estimate or histogram
samples.get: Get settings used for calculations
samples.history: Trace of a variable
samples.monitors: Names of monitored scalar variables
samples.sample: Stored values
samples.set: Start recording
samples.setting: Change settings used for calculations
samples.size: Size of the stored sample
samples.stats: Calculate summary statistics
set.values: Setting current values
summary: Summary of MCMC simulation
unix/loadOpenBUGS: Load OpenBUGS from given directory
windows/loadOpenBUGS: Load OpenBUGS from given directory
write.datafile: Write data for OpenBUGS - intended for internal use only
write.model: Creating an OpenBUGS model file

Functions

BRugs Man page
BRugsFit Man page Source code
BugsCmd Source code
CharArray Source code
CmdInterpreter Source code
Integer Source code
OpenBUGS Source code
OpenBUGS.helper Source code
OpenBUGS.platform Source code Source code
RealArray Source code
SamplesGlobalsCmd Source code
bgrGrid Man page
bgrPoint Man page
buffer Man page Source code
bugsData Man page
bugsInits Man page
buildMCMC Man page Source code
dicClear Man page
dicSet Man page
dicStats Man page
dimensions Man page
dquote Source code
findOpenBUGS Source code
formatdata Man page
getChain Man page
getNumChains Man page
handleRes Source code
help.BRugs Man page Source code Source code
help.WinBUGS Man page Source code Source code
infoMemory Man page
infoModules Man page
infoNodeMethods Man page Source code
infoNodeTypes Man page Source code
infoNodeValues Man page
infoUpdatersbyDepth Man page Source code
infoUpdatersbyName Man page Source code
loadOpenBUGS Man page Man page Source code
modelAdaptivePhase Man page
modelCheck Man page
modelCompile Man page
modelData Man page
modelDisable Man page Source code
modelEnable Man page Source code
modelGenInits Man page
modelInits Man page
modelIteration Man page
modelNames Man page
modelPrecision Man page
modelSaveState Man page
modelSetAP Man page
modelSetIts Man page
modelSetOR Man page
modelSetRN Man page
modelSetWD Man page
modelUpdate Man page
plotAutoC Man page
plotBgr Man page
plotDensity Man page
plotHistory Man page
ranksClear Man page
ranksSet Man page
ranksStats Man page
ratsdata Man page
ratsinits Man page
replaceScientificNotationR Source code
replaceScientificNotationS Source code
samplesAutoC Man page
samplesBgr Man page
samplesClear Man page
samplesCoda Man page
samplesCorrel Man page
samplesDensity Man page
samplesGetBeg Man page
samplesGetEnd Man page
samplesGetFirstChain Man page
samplesGetLastChain Man page
samplesGetThin Man page
samplesHistory Man page
samplesMonitors Man page
samplesSample Man page
samplesSet Man page
samplesSetBeg Man page
samplesSetEnd Man page
samplesSetFirstChain Man page
samplesSetLastChain Man page
samplesSetThin Man page
samplesSize Man page
samplesStats Man page
setValues Man page
summaryClear Man page
summarySet Man page
summaryStats Man page
write.datafile Man page
writeModel Man page Source code

Files

inst
inst/CITATION
configure.ac
tests
tests/examples.Rout.save
tests/test.sh
tests/local.R
tests/functions.Rout.save
tests/functions.R
tests/BRugs.Rout.save
tests/BRugs.R
tests/examples.R
tests/examples.stats.R
src
src/BugsHelper.c
src/Makefile.win
src/Makevars.in
NAMESPACE
NEWS
data
data/ratsinits.RData
data/ratsdata.RData
R
R/model.names.R
R/buffer.R
R/plot.autoC.R
R/summary.set.R
R/plot.bgr.R
R/plot.density.R
R/model.adaptivePhase.R
R/summary.clear.R
R/ranks.clear.R
R/samples.set.thin.R
R/ranks.set.R
R/model.data.R
R/samples.set.end.R
R/samples.size.R
R/BRugsFit.R
R/model.iteration.R
R/info.memory.R
R/model.update.R
R/get.chain.R
R/samples.clear.R
R/samples.correl.R
R/dimensions.R
R/model.precision.R
R/info.node.R
R/buildMCMC.R
R/samples.get.lastChain.R
R/model.setWD.R
R/model.setIts.R
R/bgr.grid.R
R/model.inits.R
R/model.setOR.R
R/samples.stats.R
R/get.num.chains.R
R/samples.get.thin.R
R/samples.history.R
R/dic.clear.R
R/samples.coda.R
R/model.setAP.R
R/dic.set.R
R/dic.stats.R
R/windows
R/windows/findOpenBUGS.R
R/windows/zzz.i386.R
R/windows/internal.R
R/windows/help.R
R/windows/zzz.x64.R
R/windows/zzz.R
R/samples.get.end.R
R/bugs.data.R
R/model.save.state.R
R/formatdata.R
R/model.getRN.R
R/info.modules.R
R/write.model.R
R/model.factory.R
R/samples.get.beg.R
R/samples.autoC.R
R/internal.R
R/model.check.R
R/plot.history.R
R/info.updaters.R
R/samples.set.R
R/samples.set.beg.R
R/samples.get.firstChain.R
R/write.datafile.R
R/unix
R/unix/zzz.R.in
R/unix/internal.R
R/unix/help.R
R/unix/zzz.R
R/samples.bgr.R
R/summary.stats.R
R/ranks.stats.R
R/samples.set.lastChain.R
R/model.gen.inits.R
R/bgr.point.R
R/samples.sample.R
R/model.compile.R
R/model.setRN.R
R/samples.set.firstChain.R
R/bugs.inits.R
R/samples.monitors.R
R/samples.density.R
R/zzz.R
R/set.values.R
MD5
DESCRIPTION
configure
man
man/model.iteration.Rd
man/bugs.inits.Rd
man/samples.correl.Rd
man/model.setAP.Rd
man/set.values.Rd
man/rats.Rd
man/model.compile.Rd
man/info.memory.Rd
man/samples.set.Rd
man/samples.sample.Rd
man/samples.setting.Rd
man/get.num.chains.Rd
man/model.update.Rd
man/bgr.point.Rd
man/samples.clear.Rd
man/buffer.Rd
man/model.RN.Rd
man/BRugsFit.Rd
man/model.inits.Rd
man/BRugs.Rd
man/windows
man/windows/loadOpenBUGS.Rd
man/dimensions.Rd
man/bugs.data.Rd
man/info.modules.Rd
man/samples.stats.Rd
man/model.adaptivePhase.Rd
man/model.names.Rd
man/samples.size.Rd
man/samples.monitors.Rd
man/samples.get.Rd
man/buildMCMC.Rd
man/plot.bgr.Rd
man/dic.Rd
man/samples.history.Rd
man/unix
man/unix/loadOpenBUGS.Rd
man/model.setWD.Rd
man/model.check.Rd
man/write.datafile.Rd
man/model.data.Rd
man/samples.autoC.Rd
man/ranks.Rd
man/plot.density.Rd
man/info.node.Rd
man/plot.autoC.Rd
man/write.model.Rd
man/get.chain.Rd
man/plot.history.Rd
man/info.updaters.Rd
man/model.factory.Rd
man/model.precision.Rd
man/samples.density.Rd
man/summary.Rd
man/samples.bgr.Rd
man/model.save.state.Rd
man/help.WinBUGS.Rd
man/model.gen.inits.Rd
man/samples.coda.Rd
configure.win
BRugs documentation built on May 19, 2017, 6:19 p.m.