BRugs: Interface to the 'OpenBUGS' MCMC Software

Fully-interactive R interface to the 'OpenBUGS' software for Bayesian analysis using MCMC sampling. Runs natively and stably in 32-bit R under Windows. Versions running on Linux and on 64-bit R under Windows are in "beta" status and less efficient.

AuthorOpenBUGS was developed by Andrew Thomas, Dave Lunn, David Spiegelhalter and Nicky Best. R interface developed by Uwe Ligges, Sibylle Sturtz, Andrew Gelman, Gregor Gorjanc and Chris Jackson. Linux port and most recent developments by Chris Jackson.
Date of publication2015-12-16 09:36:46
MaintainerUwe Ligges <ligges@statistik.tu-dortmund.de>
LicenseGPL-2
Version0.8-6
http://www.openbugs.net/

View on CRAN

Man pages

bgr.point: Internal functions (to support plotting the Gelman-Rubin...

BRugs: Introduction to BRugs

BRugsFit: BRugs' meta function

buffer: Reading OpenBUGS buffer file

bugs.data: Writing input for OpenBUGS

bugs.inits: Writing input for OpenBUGS

buildMCMC: Generating mcmc.list objects for package coda

dic: DIC

dimensions: Dimension of BUGS variables

get.chain: Current chain to be initialized

get.num.chains: Number of chains

help.WinBUGS: WinBUGS documentation

info.memory: Show memory usage

info.modules: Loaded modules

info.node: Node information

info.updaters: Information on MCMC updaters

model.adaptivePhase: Getting length of adaptive phase

model.check: Checking the model file

model.compile: Compiling the model

model.data: Loading the data

model.factory: Enable and disable factories to create updaters

model.gen.inits: Generating initial values

model.inits: Loading initial values

model.iteration: Returns number of iterations

model.names: Get variable names in model

model.precision: Setting precision for prec figures

model.RN: State of Random Number Generator

model.save.state: Save the model's current state

model.setAP: Changing settings of updating algorithms

model.setWD: Set working directory

model.update: Updating the model

plot.autoC: Plot autocorrelation function for a scalar variable

plot.bgr: Plot the Gelman-Rubin convergence statistic for a scalar...

plot.density: Plot density estimate or histogram of a scalar variable

plot.history: Trace of a scalar variable

ranks: Calculation of ranks

rats: ratsdata example

samples.autoC: Plot autocorrelation function

samples.bgr: Plot the Gelman-Rubin convergence statistic

samples.clear: Clear recorded values

samples.coda: Writing files in CODA format

samples.correl: Correlation

samples.density: Plot density estimate or histogram

samples.get: Get settings used for calculations

samples.history: Trace of a variable

samples.monitors: Names of monitored scalar variables

samples.sample: Stored values

samples.set: Start recording

samples.setting: Change settings used for calculations

samples.size: Size of the stored sample

samples.stats: Calculate summary statistics

set.values: Setting current values

summary: Summary of MCMC simulation

unix/loadOpenBUGS: Load OpenBUGS from given directory

windows/loadOpenBUGS: Load OpenBUGS from given directory

write.datafile: Write data for OpenBUGS - intended for internal use only

write.model: Creating an OpenBUGS model file

Files in this package

BRugs
BRugs/inst
BRugs/inst/CITATION
BRugs/configure.ac
BRugs/tests
BRugs/tests/examples.Rout.save
BRugs/tests/test.sh
BRugs/tests/local.R
BRugs/tests/functions.Rout.save
BRugs/tests/functions.R
BRugs/tests/BRugs.Rout.save
BRugs/tests/BRugs.R
BRugs/tests/examples.R
BRugs/tests/examples.stats.R
BRugs/src
BRugs/src/BugsHelper.c
BRugs/src/Makefile.win
BRugs/src/Makevars.in
BRugs/NAMESPACE
BRugs/NEWS
BRugs/data
BRugs/data/ratsinits.RData
BRugs/data/ratsdata.RData
BRugs/R
BRugs/R/model.names.R BRugs/R/buffer.R BRugs/R/plot.autoC.R BRugs/R/summary.set.R BRugs/R/plot.bgr.R BRugs/R/plot.density.R BRugs/R/model.adaptivePhase.R BRugs/R/summary.clear.R BRugs/R/ranks.clear.R BRugs/R/samples.set.thin.R BRugs/R/ranks.set.R BRugs/R/model.data.R BRugs/R/samples.set.end.R BRugs/R/samples.size.R BRugs/R/BRugsFit.R BRugs/R/model.iteration.R BRugs/R/info.memory.R BRugs/R/model.update.R BRugs/R/get.chain.R BRugs/R/samples.clear.R BRugs/R/samples.correl.R BRugs/R/dimensions.R BRugs/R/model.precision.R BRugs/R/info.node.R BRugs/R/buildMCMC.R BRugs/R/samples.get.lastChain.R BRugs/R/model.setWD.R BRugs/R/model.setIts.R BRugs/R/bgr.grid.R BRugs/R/model.inits.R BRugs/R/model.setOR.R BRugs/R/samples.stats.R BRugs/R/get.num.chains.R BRugs/R/samples.get.thin.R BRugs/R/samples.history.R BRugs/R/dic.clear.R BRugs/R/samples.coda.R BRugs/R/model.setAP.R BRugs/R/dic.set.R BRugs/R/dic.stats.R
BRugs/R/windows
BRugs/R/windows/findOpenBUGS.R BRugs/R/windows/zzz.i386.R BRugs/R/windows/internal.R BRugs/R/windows/help.R BRugs/R/windows/zzz.x64.R BRugs/R/windows/zzz.R BRugs/R/samples.get.end.R BRugs/R/bugs.data.R BRugs/R/model.save.state.R BRugs/R/formatdata.R BRugs/R/model.getRN.R BRugs/R/info.modules.R BRugs/R/write.model.R BRugs/R/model.factory.R BRugs/R/samples.get.beg.R BRugs/R/samples.autoC.R BRugs/R/internal.R BRugs/R/model.check.R BRugs/R/plot.history.R BRugs/R/info.updaters.R BRugs/R/samples.set.R BRugs/R/samples.set.beg.R BRugs/R/samples.get.firstChain.R BRugs/R/write.datafile.R
BRugs/R/unix
BRugs/R/unix/zzz.R.in
BRugs/R/unix/internal.R BRugs/R/unix/help.R BRugs/R/unix/zzz.R BRugs/R/samples.bgr.R BRugs/R/summary.stats.R BRugs/R/ranks.stats.R BRugs/R/samples.set.lastChain.R BRugs/R/model.gen.inits.R BRugs/R/bgr.point.R BRugs/R/samples.sample.R BRugs/R/model.compile.R BRugs/R/model.setRN.R BRugs/R/samples.set.firstChain.R BRugs/R/bugs.inits.R BRugs/R/samples.monitors.R BRugs/R/samples.density.R BRugs/R/zzz.R BRugs/R/set.values.R
BRugs/MD5
BRugs/DESCRIPTION
BRugs/configure
BRugs/man
BRugs/man/model.iteration.Rd BRugs/man/bugs.inits.Rd BRugs/man/samples.correl.Rd BRugs/man/model.setAP.Rd BRugs/man/set.values.Rd BRugs/man/rats.Rd BRugs/man/model.compile.Rd BRugs/man/info.memory.Rd BRugs/man/samples.set.Rd BRugs/man/samples.sample.Rd BRugs/man/samples.setting.Rd BRugs/man/get.num.chains.Rd BRugs/man/model.update.Rd BRugs/man/bgr.point.Rd BRugs/man/samples.clear.Rd BRugs/man/buffer.Rd BRugs/man/model.RN.Rd BRugs/man/BRugsFit.Rd BRugs/man/model.inits.Rd BRugs/man/BRugs.Rd
BRugs/man/windows
BRugs/man/windows/loadOpenBUGS.Rd
BRugs/man/dimensions.Rd BRugs/man/bugs.data.Rd BRugs/man/info.modules.Rd BRugs/man/samples.stats.Rd BRugs/man/model.adaptivePhase.Rd BRugs/man/model.names.Rd BRugs/man/samples.size.Rd BRugs/man/samples.monitors.Rd BRugs/man/samples.get.Rd BRugs/man/buildMCMC.Rd BRugs/man/plot.bgr.Rd BRugs/man/dic.Rd BRugs/man/samples.history.Rd
BRugs/man/unix
BRugs/man/unix/loadOpenBUGS.Rd
BRugs/man/model.setWD.Rd BRugs/man/model.check.Rd BRugs/man/write.datafile.Rd BRugs/man/model.data.Rd BRugs/man/samples.autoC.Rd BRugs/man/ranks.Rd BRugs/man/plot.density.Rd BRugs/man/info.node.Rd BRugs/man/plot.autoC.Rd BRugs/man/write.model.Rd BRugs/man/get.chain.Rd BRugs/man/plot.history.Rd BRugs/man/info.updaters.Rd BRugs/man/model.factory.Rd BRugs/man/model.precision.Rd BRugs/man/samples.density.Rd BRugs/man/summary.Rd BRugs/man/samples.bgr.Rd BRugs/man/model.save.state.Rd BRugs/man/help.WinBUGS.Rd BRugs/man/model.gen.inits.Rd BRugs/man/samples.coda.Rd
BRugs/configure.win

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.