Man pages for BRugs
Interface to the 'OpenBUGS' MCMC Software
| bgr.point | Internal functions (to support plotting the Gelman-Rubin... |
| BRugs | Introduction to BRugs |
| BRugsFit | BRugs' meta function |
| buffer | Reading OpenBUGS buffer file |
| bugs.data | Writing input for OpenBUGS |
| bugs.inits | Writing input for OpenBUGS |
| buildMCMC | Generating mcmc.list objects for package coda |
| dic | DIC |
| dimensions | Dimension of BUGS variables |
| get.chain | Current chain to be initialized |
| get.num.chains | Number of chains |
| help.WinBUGS | WinBUGS documentation |
| info.memory | Show memory usage |
| info.modules | Loaded modules |
| info.node | Node information |
| info.updaters | Information on MCMC updaters |
| model.adaptivePhase | Getting length of adaptive phase |
| model.check | Checking the model file |
| model.compile | Compiling the model |
| model.data | Loading the data |
| model.factory | Enable and disable factories to create updaters |
| model.gen.inits | Generating initial values |
| model.inits | Loading initial values |
| model.iteration | Returns number of iterations |
| model.names | Get variable names in model |
| model.precision | Setting precision for prec figures |
| model.RN | State of Random Number Generator |
| model.save.state | Save the model's current state |
| model.setAP | Changing settings of updating algorithms |
| model.setWD | Set working directory |
| model.update | Updating the model |
| plot.autoC | Plot autocorrelation function for a scalar variable |
| plot.bgr | Plot the Gelman-Rubin convergence statistic for a scalar... |
| plot.density | Plot density estimate or histogram of a scalar variable |
| plot.history | Trace of a scalar variable |
| ranks | Calculation of ranks |
| rats | ratsdata example |
| samples.autoC | Plot autocorrelation function |
| samples.bgr | Plot the Gelman-Rubin convergence statistic |
| samples.clear | Clear recorded values |
| samples.coda | Writing files in CODA format |
| samples.correl | Correlation |
| samples.density | Plot density estimate or histogram |
| samples.get | Get settings used for calculations |
| samples.history | Trace of a variable |
| samples.monitors | Names of monitored scalar variables |
| samples.sample | Stored values |
| samples.set | Start recording |
| samples.setting | Change settings used for calculations |
| samples.size | Size of the stored sample |
| samples.stats | Calculate summary statistics |
| set.values | Setting current values |
| summary | Summary of MCMC simulation |
| unix/loadOpenBUGS | Load OpenBUGS from given directory |
| windows/loadOpenBUGS | Load OpenBUGS from given directory |
| write.datafile | Write data for OpenBUGS - intended for internal use only |
| write.model | Creating an OpenBUGS model file |
