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# 2018-11-27 CJS - removed call to OpenBugs. Left function here in case we want to change samplers in the future.
# 2013-12-30 CJS - function to switch between the three samplers as needed.
# This way we wont't have to modify much code (hopefully)
#' @keywords internal
run.MCMC <-
function(modelFile,
dataFile,
dataList,
initFiles,
initVals,
parameters,
nChains,
nIter,
nBurnin,
nSims,
overRelax=FALSE,
initialSeed,
working.directory,
debug=FALSE){
results <- run.jags(modelFile=modelFile,
dataFile=dataFile,
dataList=dataList,
initFiles=initFiles,
initVals=initVals,
parameters=parameters,
nChains=nChains,
nIter=nIter,
nBurnin=nBurnin,
nSims=nSims,
overRelax=overRelax,
initialSeed=initialSeed,
working.directory=working.directory,
debug=debug)
return(results)
} # end of function
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