hapBVS: Function to estimate and report a set of haplotypes given a...
In BVS: Bayesian Variant Selection: Bayesian Model Uncertainty Techniques for Genetic Association Studies
Description
Usage
Arguments
Value
Author(s)
Description
This function takes a subset of variants and estimates a set of haplotypes. Only haplotypes with a frequency greater than min.Hap.freq are reported.
Usage
1
hapBVS(G,min.Hap.freq)
Arguments
G
an (n x g) matrix of a subset of g SNPs of interest that are each coded as a numeric variable that corresponds to the number of copies of minor alleles (0|1|2)
min.Hap.freq
the minimum haplotype frequency of which an estimated haplotype is reported
Value
This function outputs a matrix of estimated haplotypes.
Author(s)
Melanie Quintana <maw27.wilson@gmail.com>
BVS documentation built on May 1, 2019, 10:16 p.m.
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Description Usage Arguments Value Author(s)
Description
This function takes a subset of variants and estimates a set of haplotypes. Only haplotypes with a frequency greater than min.Hap.freq are reported.
Usage
1 | hapBVS(G,min.Hap.freq)
|
Arguments
G |
an (n x g) matrix of a subset of g SNPs of interest that are each coded as a numeric variable that corresponds to the number of copies of minor alleles (0|1|2) |
min.Hap.freq |
the minimum haplotype frequency of which an estimated haplotype is reported |
Value
This function outputs a matrix of estimated haplotypes.
Author(s)
Melanie Quintana <maw27.wilson@gmail.com>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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