coef.BayesSUR: extract the posterior mean of the coefficients of a...

Description Usage Arguments Value Examples

View source: R/coef.BayesSUR.R

Description

Extract the posterior mean of the coefficients of a "BayesSUR" class object

Usage

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## S3 method for class 'BayesSUR'
coef(object, Pmax = 0, ...)

Arguments

object

an object of class "BayesSUR"

Pmax

threshold that truncates the estimated coefficients based on thresholding the estimated latent indicator variable. Default is 0.

...

other arguments

Value

Estimated coefficients are from an object of class "BayesSUR". If the BayesSUR specified data standardization, the fitted values are base based on standardized data.

Examples

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data("example_eQTL", package = "BayesSUR")
hyperpar <- list( a_w = 2 , b_w = 5 )

fit <- BayesSUR(Y = example_eQTL[["blockList"]][[1]], 
                X = example_eQTL[["blockList"]][[2]],
                data = example_eQTL[["data"]], outFilePath = tempdir(),
                nIter = 100, burnin = 50, nChains = 2, gammaPrior = "hotspot",
                hyperpar = hyperpar, tmpFolder = "tmp/" )

## check prediction
beta.hat <- coef(fit)

BayesSUR documentation built on Dec. 18, 2019, 1:42 a.m.