Description Usage Arguments Examples

View source: R/plot.BayesSUR.R

Convenience function to create a selection of plots for a "BayesSUR" class object. They are plots of estimators, response graph, network, manhattan and MCMC diagnosis indexed by numbers 1:5.

1 2 |

`x` |
an object of class "BayesSUR". |

`which` |
if a subset of the plots is required, specify a subset of the numbers 1:5 which are plots of estimators, response graph, network, manhattan and MCMC diagnosis, respectively. Default is |

`...` |
other arguments |

1 2 3 4 5 6 7 8 9 10 11 12 13 14 | ```
data("example_eQTL", package = "BayesSUR")
hyperpar = list( a_w = 2 , b_w = 5 )
fit <- BayesSUR(Y = example_eQTL[["blockList"]][[1]],
X = example_eQTL[["blockList"]][[2]],
data = example_eQTL[["data"]], outFilePath = tempdir(),
nIter = 100, burnin = 0, nChains = 2, gammaPrior = "hotspot",
hyperpar = hyperpar, tmpFolder = "tmp/" )
## check output
# Show the interactive plots. Note that it needs at least 2000*(nbloc+1) iterations
# for the diagnosis plots where nbloc=3 by default
plot(fit)
``` |

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