Bayesthresh: Bayesian thresholds mixed-effects models for categorical data

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This package fits a linear mixed model for ordinal categorical responses using Bayesian inference via Monte Carlo Markov Chains. Default is Nandran & Chen algorithm using Gaussian link function and saving just the summaries of the chains. Among the options, package allow for two other options of algorithms, for using Student's "t" link function and for saving the full chains.

Author
Fabio Mathias Correa <fmcorrea@uesc.br> and Julio Silvio de Sousa Bueno Filho <juliobuenof@gmail.com>
Date of publication
2013-03-26 12:05:55
Maintainer
Fabio Mathias Correa <fmcorrea@uesc.br>
License
GPL (>= 2)
Version
2.0.1

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Man pages

ACGaussian
Albert and Chib algorithm with Gaussian distribution for...
ACt
Albert and Chib algorithm with t-Student distribution for...
Bayes.factor
Bayes factor of the two models
Bayesthresh
Bayesian thresholds mixed-effects models for categorical data
coef.Bayesthresh
Coefficients for the fixed effects model
compVar
Variance component estimates
MCGaussian
Kizilkaya et. al. (2003) algorithm with Gaussian distribution...
MCMCsample
MCMC sample
MCt
Kizilkaya et. al. (2003) algorithm using Student's "t"...
NCGaussian
Nandram and Chen (1996) algorithm with Gaussian distribution...
NCt
Nandram and Chen (1996) algorithm with t-Student distribution...
plot.random.effects
Plot random effects of model
predict.Bayesthresh
Extract the predict values
random.effects
Extract the random effects of the model
sensory
Sensory analysis of banana
summary.Bayesthresh
Summary

Files in this package

Bayesthresh
Bayesthresh/MD5
Bayesthresh/data
Bayesthresh/data/sensory.rda
Bayesthresh/man
Bayesthresh/man/Bayes.factor.Rd
Bayesthresh/man/plot.random.effects.Rd
Bayesthresh/man/sensory.Rd
Bayesthresh/man/ACt.Rd
Bayesthresh/man/predict.Bayesthresh.Rd
Bayesthresh/man/coef.Bayesthresh.Rd
Bayesthresh/man/random.effects.Rd
Bayesthresh/man/Bayesthresh.Rd
Bayesthresh/man/MCMCsample.Rd
Bayesthresh/man/NCt.Rd
Bayesthresh/man/MCGaussian.Rd
Bayesthresh/man/compVar.Rd
Bayesthresh/man/summary.Bayesthresh.Rd
Bayesthresh/man/NCGaussian.Rd
Bayesthresh/man/MCt.Rd
Bayesthresh/man/ACGaussian.Rd
Bayesthresh/src
Bayesthresh/src/acum.c
Bayesthresh/src/vua.f95
Bayesthresh/src/partition.f95
Bayesthresh/src/dist.c
Bayesthresh/src/lambda.f95
Bayesthresh/R
Bayesthresh/R/predict.Bayesthresh.R
Bayesthresh/R/coef.Bayesthresh.R
Bayesthresh/R/random.effects.R
Bayesthresh/R/MCMCsample.R
Bayesthresh/R/compVar.R
Bayesthresh/R/Bayes.factor.R
Bayesthresh/R/Bayesthresh.R
Bayesthresh/R/plot.random.effects.R
Bayesthresh/DESCRIPTION
Bayesthresh/NAMESPACE
Bayesthresh/ChangeLog
Bayesthresh/inst
Bayesthresh/inst/CITATION