BiBitR: A biclustering algorithm for extracting bit-patterns from...
In BiBitR: R Wrapper for Java Implementation of BiBit
Description
BiBitR is a simple R wrapper which directly calls the original Java code for applying the BiBit algorithm.
The original Java code can be found at http://eps.upo.es/bigs/BiBit.html by Domingo S. Rodriguez-Baena, Antonia J. Perez-Pulido and Jesus S. Aguilar-Ruiz.
The BiBitR package also includes the following functions and/or workflows:
A slightly adapted version of the original BiBit algorithm which now allows allows noise when adding rows to the bicluster (bibit2).
A function which accepts a pattern and, using the BiBit algorithm, will find biclusters fully or partly fitting the given pattern (bibit3).
A workflow which can discover larger patterns (and their biclusters) using BiBit and classic hierarchical clustering approaches (BiBitWorkflow).
References
Domingo S. Rodriguez-Baena, Antonia J. Perez-Pulido and Jesus S. Aguilar-Ruiz (2011), "A biclustering algorithm for extracting bit-patterns from binary datasets", Bioinformatics
BiBitR documentation built on May 2, 2019, 4:18 a.m.
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Description
BiBitR is a simple R wrapper which directly calls the original Java code for applying the BiBit algorithm. The original Java code can be found at http://eps.upo.es/bigs/BiBit.html by Domingo S. Rodriguez-Baena, Antonia J. Perez-Pulido and Jesus S. Aguilar-Ruiz.
The BiBitR package also includes the following functions and/or workflows:
A slightly adapted version of the original BiBit algorithm which now allows allows noise when adding rows to the bicluster (
bibit2).A function which accepts a pattern and, using the BiBit algorithm, will find biclusters fully or partly fitting the given pattern (
bibit3).A workflow which can discover larger patterns (and their biclusters) using BiBit and classic hierarchical clustering approaches (
BiBitWorkflow).
References
Domingo S. Rodriguez-Baena, Antonia J. Perez-Pulido and Jesus S. Aguilar-Ruiz (2011), "A biclustering algorithm for extracting bit-patterns from binary datasets", Bioinformatics
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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