BiSEp: Toolkit to Identify Candidate Synthetic Lethality

Enables the user to infer potential synthetic lethal relationships by analysing relationships between bimodally distributed gene pairs in big gene expression datasets. Enables the user to visualise these candidate synthetic lethal relationships.

Author
Mark Wappett
Date of publication
2015-03-03 14:26:59
Maintainer
Mark Wappett <m.a.wappett@googlemail.com>
License
Artistic-2.0
Version
2.0.1

View on CRAN

Man pages

BEEM
BEEM: Bimodal Expression Exclusive with Mutation
BIGEE
BIGEE: Bimodal Gene Expression Exclusivity.
BISEP
BISEP: Bimodality in Gene Expression data.
BISEP_dat
A list object containing 3 data frames.
BISEP_Data
A list object containing 3 data frames.
BiSEp-package
BiSEp: Bimodality in gene expression to dissect tumours and...
expressionPlot
expressionPlot: Create visualisations from BIGEE output
FURE
FURE: Functional redundancy between synthetic lethal gene...
FURE_data
Output matrix from the BIGEE tool
INPUT_data
A Log2 Gene Expression matrix
MUT_data
A matrix containing discreet mutation calls
waterfallPlot
waterfallPlot: Create visualisations from BEEM output

Files in this package

BiSEp
BiSEp/inst
BiSEp/inst/doc
BiSEp/inst/doc/BiSEp.pdf
BiSEp/inst/doc/BiSEp.R
BiSEp/inst/doc/BiSEp.Snw
BiSEp/NAMESPACE
BiSEp/data
BiSEp/data/FURE_data.RData
BiSEp/data/BISEP_dat.RData
BiSEp/data/BISEP_data.RData
BiSEp/data/INPUT_data.RData
BiSEp/data/MUT_data.RData
BiSEp/R
BiSEp/R/BIGEE.R
BiSEp/R/BEEM.R
BiSEp/R/waterfallPlot.R
BiSEp/R/FURE.R
BiSEp/R/expressionPlot.R
BiSEp/R/BISEP.R
BiSEp/vignettes
BiSEp/vignettes/BiSEp.Snw
BiSEp/MD5
BiSEp/build
BiSEp/build/vignette.rds
BiSEp/DESCRIPTION
BiSEp/man
BiSEp/man/BEEM.Rd
BiSEp/man/waterfallPlot.Rd
BiSEp/man/BISEP_dat.Rd
BiSEp/man/BiSEp-package.Rd
BiSEp/man/MUT_data.Rd
BiSEp/man/FURE_data.Rd
BiSEp/man/expressionPlot.Rd
BiSEp/man/BIGEE.Rd
BiSEp/man/FURE.Rd
BiSEp/man/INPUT_data.Rd
BiSEp/man/BISEP.Rd
BiSEp/man/BISEP_Data.Rd