BinaryEPPM: Mean and Variance Modeling of Binary Data

Modeling under- and over-dispersed binary data using extended Poisson process models (EPPM).

Author
David M Smith, Malcolm J Faddy
Date of publication
2016-11-28 16:53:51
Maintainer
David M. Smith <david.m.smith@truvenhealth.com>
License
GPL-2
Version
2.0

View on CRAN

Man pages

BBprob
Calculation of vector of probabilities for the beta binomial...
Berkshires.litters
The data are of the number of male piglets born in litters of...
BinaryEPPM
Fitting of EPPM models to binary data.
BinaryEPPM-package
\Sexpr[results=rd,stage=build]{tools:::Rd_package_title("BinaryEPPM")}
CBprob
Calculation of vector of probabilities for the correlated...
coef.BinaryEPPM
Extraction of model coefficients for BinaryEPPM Objects
cooks.distance.BinaryEPPM
Cook's distance for BinaryEPPM Objects
doubexp
Double exponential Link Function
doubrecip
Double reciprocal Link Function
EPPMprob
Calculation of vector of probabilities for a extended Poisson...
fitted.BinaryEPPM
Extraction of fitted values from BinaryEPPM Objects
foodstamp.case
Participation in the federal food stamp program.
foodstamp.grouped
Participation in the federal food stamp program as a list not...
GasolineYield
Data on gasoline yields.
GBprob
Calculation of vector of probabilities for the generalized...
hatvalues.BinaryEPPM
Extraction of hat matrix values from BinaryEPPM Objects
Hiroshima.case
Individual case data of chromosome aberrations in survivors...
Hiroshima.grouped
Data of chromosome aberrations in survivors of Hiroshima...
KupperHaseman.case
Kupper and Haseman example data
LL.gradient
Function used to calculate the first derivatives of the log...
LL.Regression.Binary
Function called by optim to calculate the log likelihood from...
logLik.BinaryEPPM
Extract Log-Likelihood
loglog
Log-log Link Function
Luningetal.litters
Number of trials (implantations) in data of Luning, et al.,...
Model.BCBinProb
Probabilities for beta and correlated binomial distributions...
Model.Binary
Function for obtaining output from distributional models.
Model.GB
Probabilities for binomial and generalized binomial...
Model.JMVGB
Probabilities for generalized binomial distributions given...
Parkes.litters
The data are of the number of male piglets born in litters of...
plot.BinaryEPPM
Diagnostic Plots for BinaryEPPM Objects
powerlogit
Power Logit Link Function
predict.BinaryEPPM
Prediction Method for BinaryEPPM Objects
print.BinaryEPPM
Printing of BinaryEPPM Objects
print.summaryBinaryEPPM
Printing of summaryBinaryEPPM Objects
residuals.BinaryEPPM
Residuals for BinaryEPPM Objects
ropespores.case
Dilution series for the presence of rope spores.
ropespores.grouped
Dilution series for the presence of rope spores.
summary.BinaryEPPM
Summary of BinaryEPPM Objects
Titanic.survivors.case
Individual case data of Titanic survivors
Titanic.survivors.grouped
Titanic survivors data in frequency distribution form.
vcov.BinaryEPPM
Variance/Covariance Matrix for Coefficients
Williams.litters
Number of implantations, data of Williams (1996).
Yorkshires.litters
The data are of the number of male piglets born in litters of...

Files in this package

BinaryEPPM
BinaryEPPM/NAMESPACE
BinaryEPPM/data
BinaryEPPM/data/Titanic.survivors.case.rda
BinaryEPPM/data/Williams.litters.rda
BinaryEPPM/data/foodstamp.case.rda
BinaryEPPM/data/ropespores.case.rda
BinaryEPPM/data/Parkes.litters.rda
BinaryEPPM/data/KupperHaseman.case.rda
BinaryEPPM/data/Hiroshima.case.rda
BinaryEPPM/data/Yorkshires.litters.rda
BinaryEPPM/data/Titanic.survivors.grouped.rda
BinaryEPPM/data/Hiroshima.grouped.rda
BinaryEPPM/data/ropespores.grouped.rda
BinaryEPPM/data/GasolineYield.rda
BinaryEPPM/data/Berkshires.litters.rda
BinaryEPPM/data/Luningetal.litters.rda
BinaryEPPM/data/foodstamp.grouped.rda
BinaryEPPM/R
BinaryEPPM/R/Model.GB.R
BinaryEPPM/R/residuals.BinaryEPPM.R
BinaryEPPM/R/Model.JMVGB.R
BinaryEPPM/R/powerlogit.R
BinaryEPPM/R/BBprob.R
BinaryEPPM/R/LL.gradient.R
BinaryEPPM/R/cooks.distance.BinaryEPPM.R
BinaryEPPM/R/GBprob.R
BinaryEPPM/R/predict.BinaryEPPM.R
BinaryEPPM/R/doubexp.R
BinaryEPPM/R/coef.BinaryEPPM.R
BinaryEPPM/R/BinaryEPPM.R
BinaryEPPM/R/Model.BCBinProb.R
BinaryEPPM/R/hatvalues.BinaryEPPM.R
BinaryEPPM/R/CBprob.R
BinaryEPPM/R/EPPMprob.R
BinaryEPPM/R/vcov.BinaryEPPM.R
BinaryEPPM/R/Model.Binary.R
BinaryEPPM/R/doubrecip.R
BinaryEPPM/R/logLik.BinaryEPPM.R
BinaryEPPM/R/plot.BinaryEPPM.R
BinaryEPPM/R/fitted.BinaryEPPM.R
BinaryEPPM/R/LL.Regression.Binary.R
BinaryEPPM/R/loglog.R
BinaryEPPM/R/print.BinaryEPPM.R
BinaryEPPM/R/summary.BinaryEPPM.R
BinaryEPPM/R/print.summaryBinaryEPPM.R
BinaryEPPM/MD5
BinaryEPPM/build
BinaryEPPM/build/partial.rdb
BinaryEPPM/DESCRIPTION
BinaryEPPM/man
BinaryEPPM/man/Titanic.survivors.grouped.Rd
BinaryEPPM/man/foodstamp.grouped.Rd
BinaryEPPM/man/Titanic.survivors.case.Rd
BinaryEPPM/man/powerlogit.Rd
BinaryEPPM/man/Hiroshima.grouped.Rd
BinaryEPPM/man/BinaryEPPM-package.Rd
BinaryEPPM/man/Model.BCBinProb.Rd
BinaryEPPM/man/vcov.BinaryEPPM.Rd
BinaryEPPM/man/summary.BinaryEPPM.Rd
BinaryEPPM/man/LL.Regression.Binary.Rd
BinaryEPPM/man/fitted.BinaryEPPM.Rd
BinaryEPPM/man/CBprob.Rd
BinaryEPPM/man/Williams.litters.Rd
BinaryEPPM/man/hatvalues.BinaryEPPM.Rd
BinaryEPPM/man/GasolineYield.Rd
BinaryEPPM/man/Model.JMVGB.Rd
BinaryEPPM/man/GBprob.Rd
BinaryEPPM/man/coef.BinaryEPPM.Rd
BinaryEPPM/man/Luningetal.litters.Rd
BinaryEPPM/man/doubexp.Rd
BinaryEPPM/man/KupperHaseman.case.Rd
BinaryEPPM/man/Model.Binary.Rd
BinaryEPPM/man/doubrecip.Rd
BinaryEPPM/man/print.summaryBinaryEPPM.Rd
BinaryEPPM/man/plot.BinaryEPPM.Rd
BinaryEPPM/man/loglog.Rd
BinaryEPPM/man/Model.GB.Rd
BinaryEPPM/man/cooks.distance.BinaryEPPM.Rd
BinaryEPPM/man/BBprob.Rd
BinaryEPPM/man/BinaryEPPM.Rd
BinaryEPPM/man/ropespores.grouped.Rd
BinaryEPPM/man/residuals.BinaryEPPM.Rd
BinaryEPPM/man/logLik.BinaryEPPM.Rd
BinaryEPPM/man/print.BinaryEPPM.Rd
BinaryEPPM/man/predict.BinaryEPPM.Rd
BinaryEPPM/man/Berkshires.litters.Rd
BinaryEPPM/man/Parkes.litters.Rd
BinaryEPPM/man/ropespores.case.Rd
BinaryEPPM/man/foodstamp.case.Rd
BinaryEPPM/man/EPPMprob.Rd
BinaryEPPM/man/Hiroshima.case.Rd
BinaryEPPM/man/LL.gradient.Rd
BinaryEPPM/man/Yorkshires.litters.Rd