LGpy_splits_fn_to_table: Get the ML splits per node, from Python LAGRANGE output
In BioGeoBEARS: BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts

Description Usage Arguments Details Value Note Author(s) References See Also Examples

View source: R/BioGeoBEARS_readwrite_v1.R

Python LAGRANGE outputs a list of splits and split probabilities for each node. This function converts them to a table.

1	LGpy_splits_fn_to_table(splits_fn)

splits_fn

The filename of a Python LAGRANGE output file.

LAGRANGE outputs just the splits making up the top 95 the probability, or 15 states, whichever comes first.

See LGpy_MLsplit_per_node for choosing the single ML split at each node, and see get_lagrange_nodenums for connecting these node numbers to APE node numbers.

splits A data.frame containing the node numbers, splits, and split probabilities.

Go BEARS!

Nicholas J. Matzke matzke@berkeley.edu

http://phylo.wikidot.com/matzke-2013-international-biogeography-society-poster https://code.google.com/p/lagrange/

Matzke_2012_IBS

ReeSmith2008

get_lagrange_nodenums, LGpy_MLsplit_per_node

test=1

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