map_LG_MLsplits_to_tree: Take the table of ML splits and node number and map on tree...
In BioGeoBEARS: BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts

Description Usage Arguments Details Value Note Author(s) References See Also Examples

Given a table of splits probabilities from LGcpp_splits_fn_to_table, map the splits on the tree.

1 2	map_LG_MLsplits_to_tree(MLsplits_LGcpp, tr, tiprange_names, removechar = NULL, type = "C++")

`MLsplits_LGcpp`	A data.frame containing the node numbers, splits, and split probabilities.
`tr`	An ape phylo object
`tiprange_names`	The geographic ranges at the tips (i.e. the input data)
`removechar`	The character to remove, if needed.
`type`	The type of LAGRANGE input (default C++)

See get_lagrange_nodenums for connecting these node numbers to APE node numbers.

MLsplits_LGcpp A data.frame containing the node numbers, ML splits, and split probabilities; reordered for this plot.

Go BEARS!

Nicholas J. Matzke matzke@berkeley.edu

http://phylo.wikidot.com/matzke-2013-international-biogeography-society-poster https://code.google.com/p/lagrange/

Matzke_2012_IBS

ReeSmith2008

get_lagrange_nodenums, LGpy_splits_fn_to_table, LGcpp_splits_fn_to_table

test=1

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