order_LGnodes: Order LAGRANGE-numbered nodes so that they can be plotted in...

Description Usage Arguments Value Note Author(s) References See Also Examples

View source: R/BioGeoBEARS_plots_v1.R

Description

What it says.

Usage

1
2
  order_LGnodes(MLsplits_LGcpp, tr = NULL,
    removechar = NULL, type = "C++", type2 = "splits")

Arguments

MLsplits_LGcpp

A data.frame containing the node numbers, splits, and split probabilities.

tr

An ape phylo object

removechar

The character to remove, if needed.

type

The type of LAGRANGE input (default C++)

type2

"splits" or "states"

Value

MLsplits The splits table, ordered appropriately.

Note

Go BEARS!

Author(s)

Nicholas J. Matzke [email protected]

References

http://phylo.wikidot.com/matzke-2013-international-biogeography-society-poster https://code.google.com/p/lagrange/

Matzke_2012_IBS

ReeSmith2008

See Also

get_lagrange_nodenums, LGpy_splits_fn_to_table, LGcpp_splits_fn_to_table

Examples

1
test=1

Example output

Loading required package: rexpokit
Loading required package: SparseM

Attaching package: 'SparseM'

The following object is masked from 'package:base':

    backsolve

Loading required package: Rcpp
Loading required package: cladoRcpp
Loading required package: ape
Loading required package: phylobase

Attaching package: 'phylobase'

The following object is masked from 'package:ape':

    edges

BioGeoBEARS documentation built on May 29, 2017, 8:36 p.m.