Blossom: Statistical Comparisons with Distance-Function Based Permutation Tests

Provides tools for making statistical comparisons with distance-function based permutation tests developed by P. W. Mielke, Jr. and colleagues at Colorado State University (Mielke, P. W. & Berry, K. J. Permutation Methods: A Distance Function Approach (Springer, New York, 2001)) and for testing parameters estimated in linear models with permutation procedures developed by B. S. Cade and colleagues at the Fort Collins Science Center, U. S. Geological Survey.

AuthorMarian Talbert, Jon Richards, Paul Mielke, and Brian Cade
Date of publication2016-03-09 00:48:10
MaintainerMarian Talbert <mtalbert@usgs.gov>
LicenseGPL (>= 2)
Version1.4

View on CRAN

Man pages

acorn: Acorn Production

agree2: Lodgepole pine basal area and canopy cover

bgrouse: Blue grouse migration data

BlossomPkg: Statistical comparisons with distance-function based...

blue162: Example data of biweekly grouse locations

brad302: Hypothesized random normal N(3, 2) deviates

coverage: G-sample and goodness-of-fit tests based on empirical...

CoverageObj-class: Class '"CoverageObj"'

Dist2mvm: Report distance to the multivariate median

EMRPPObj-class: Class '"EMRPPObj"'

ex4rank: Example univariate data for MRPP

example1: Example bivariate data for MRPP

example3: Example univariate response data for MRPP

example4: Example univariate response data with outlier for MRPP

fraserf: Subalpine forest tree cover data

habitat: Blue grouse winter habitat selection data

hypothesis.test: Hypothesis testing for LAD objects

KSGFObj-class: Class "KSGFObj"

lad: Least absolute deviation

LADObj-class: Class '"LADObj"'

lahontan: Lahontan cutthroat trout density in streams

lily: Lily seedling counts

medq: Multivariate Medians and Distance Quantiles

MEDQObj-class: Class '"MEDQObj"'

mrbp: Multiresponse permutation procedures for randomized blocks

mrbp1: Variation in oven-dried biomass of shrubs

MRBPObj-class: Class '"MRBPObj"'

mrpp: Multiresponse permutation procedures

MRPPObj-class: Class '"MRPPObj"'

MRSPObj-class: Class '"MRSPObj"'

neter365: Soap scrap as a function of production line speed (Neter et...

npof: Orientation of movements of newt

ols: Ordinary least squares regression

paired1: Example of paired data set up in a blocked structure

paired2: Paired data structure

prefer: Habitat preference data for pheasants

ptmp: Permutation test for matched pairs

PTMPObj-class: Class '"PTMPObj"'

pvalue: Extract P-values

QuantValues: Report quantile values

rao: Circular orientation of homing pigeons (Rao 1976)

ResampVals: Extract resample values

sp: Multiresponse sequence procedure

Functions

acorn Man page
agree2 Man page
bgrouse Man page
BlossomPkg-package Man page
blue162 Man page
brad302 Man page
coefficients,LADObj-method Man page
coverage Man page
CoverageObj Man page
CoverageObj-class Man page
Dist2mvm Man page
Dist2mvm,MEDQObj-method Man page
Dist2mvm-methods Man page
EMRPPObj Man page
EMRPPObj-class Man page
ex4rank Man page
example1 Man page
example3 Man page
example4 Man page
fraserf Man page
habitat Man page
hypothesis.test Man page
KSGFObj-class Man page
lad Man page
LADObj Man page
LADObj-class Man page
lahontan Man page
lily Man page
medq Man page
MEDQObj Man page
MEDQObj-class Man page
mrbp Man page
mrbp1 Man page
MRBPObj-class Man page
mrpp Man page
MRPPObj-class Man page
MRSPObj Man page
MRSPObj-class Man page
neter365 Man page
npof Man page
ols Man page
paired1 Man page
paired2 Man page
predict,LADObj-method Man page
prefer Man page
print,CoverageObj-method Man page
print,EMRPPObj-method Man page
print,KSGFObj-method Man page
print,LADObj-method Man page
print,MEDQObj-method Man page
print,MRBPObj-method Man page
print,MRPPObj-method Man page
print,MRSPObj-method Man page
print,PTMPObj-method Man page
ptmp Man page
PTMPObj-class Man page
pvalue Man page
pvalue,CoverageObj-method Man page
pvalue,EMRPPObj-method Man page
pvalue,KSGFObj-method Man page
pvalue,LADObj-method Man page
pvalue-methods Man page
pvalue,MRBPObj-method Man page
pvalue,MRPPObj-method Man page
pvalue,MRSPObj-method Man page
pvalue,PTMPObj-method Man page
QuantValues Man page
QuantValues,LADObj-method Man page
QuantValues-methods Man page
rao Man page
ResampVals Man page
ResampVals,CoverageObj-method Man page
ResampVals,LADObj-method Man page
ResampVals-methods Man page
ResampVals,MRBPObj-method Man page
ResampVals,MRPPObj-method Man page
ResampVals,MRSPObj-method Man page
ResampVals,PTMPObj-method Man page
residuals,LADObj-method Man page
show,CoverageObj-method Man page
show,EMRPPObj-method Man page
show,KSGFObj-method Man page
show,LADObj-method Man page
show,MEDQObj-method Man page
show,MRBPObj-method Man page
show,MRPPObj-method Man page
show,MRSPObj-method Man page
show,PTMPObj-method Man page
sp Man page
summary,CoverageObj-method Man page
summary,EMRPPObj-method Man page
summary,KSGFObj-method Man page
summary,LADObj-method Man page
summary,MEDQObj-method Man page
summary,MRBPObj-method Man page
summary,MRPPObj-method Man page
summary,MRSPObj-method Man page
summary,PTMPObj-method Man page

Files

Blossom
Blossom/inst
Blossom/inst/doc
Blossom/inst/doc/BlossomVignette.pdf
Blossom/src
Blossom/src/InternalFcts.f90
Blossom/src/myHelp.c
Blossom/NAMESPACE
Blossom/data
Blossom/data/mrbp1.txt.gz
Blossom/data/brad302.txt.gz
Blossom/data/paired1.txt.gz
Blossom/data/lily.txt.gz
Blossom/data/agree2.txt.gz
Blossom/data/bgrouse.txt.gz
Blossom/data/example4.txt.gz
Blossom/data/blue162.txt.gz
Blossom/data/acorn.txt.gz
Blossom/data/habitat.txt.gz
Blossom/data/paired2.txt.gz
Blossom/data/prefer.txt.gz
Blossom/data/ex4rank.txt.gz
Blossom/data/rao.txt.gz
Blossom/data/example1.txt.gz
Blossom/data/lahontan.txt.gz
Blossom/data/fraserf.txt.gz
Blossom/data/example3.txt.gz
Blossom/data/neter365.txt.gz
Blossom/data/npof.txt.gz
Blossom/R
Blossom/R/ptmp.r
Blossom/R/mrpp.r
Blossom/R/MedQObjDef.r
Blossom/R/lad.r
Blossom/R/EMRPPObjDef.r
Blossom/R/MRPPObjDef.r
Blossom/R/KSGFObjDef.r
Blossom/R/medq.r
Blossom/R/LADObjDef.r
Blossom/R/hypothesis.test.r
Blossom/R/PTMPObjDef.r
Blossom/R/ols.r
Blossom/R/MRBPObjDef.r
Blossom/R/CoverageObjDef.r
Blossom/R/sp.r
Blossom/R/mrbp.r
Blossom/R/coverage.r
Blossom/R/MRSPObjDef.r
Blossom/MD5
Blossom/DESCRIPTION
Blossom/man
Blossom/man/mrbp1.Rd Blossom/man/ptmp.Rd Blossom/man/rao.Rd Blossom/man/lad.Rd Blossom/man/fraserf.Rd Blossom/man/brad302.Rd Blossom/man/habitat.Rd Blossom/man/PTMPObj-class.Rd Blossom/man/example3.Rd Blossom/man/coverage.Rd Blossom/man/npof.Rd Blossom/man/MRBPObj-class.Rd Blossom/man/BlossomPkg.Rd Blossom/man/paired1.Rd Blossom/man/example1.Rd Blossom/man/CoverageObj-class.Rd Blossom/man/LADObj-class.Rd Blossom/man/agree2.Rd Blossom/man/neter365.Rd Blossom/man/MEDQObj-class.Rd Blossom/man/paired2.Rd Blossom/man/Dist2mvm.Rd Blossom/man/MRPPObj-class.Rd Blossom/man/ols.Rd Blossom/man/hypothesis.test.Rd Blossom/man/lily.Rd Blossom/man/bgrouse.Rd Blossom/man/mrbp.Rd Blossom/man/prefer.Rd Blossom/man/QuantValues.Rd Blossom/man/MRSPObj-class.Rd Blossom/man/sp.Rd Blossom/man/medq.Rd Blossom/man/ex4rank.Rd Blossom/man/KSGFObj-class.Rd Blossom/man/acorn.Rd Blossom/man/blue162.Rd Blossom/man/mrpp.Rd Blossom/man/ResampVals.Rd Blossom/man/example4.Rd Blossom/man/pvalue.Rd Blossom/man/lahontan.Rd Blossom/man/EMRPPObj-class.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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