melanoma: Melanoma Regulatory Network

In BoolFilter: Optimal Estimation of Partially Observed Boolean Dynamical Systems

Description

Melanoma Boolean regulatory network as described by sM.R. Yousefi, et al.

Usage

data(melanoma)

Details

The data consists of activities of 10 genes in melanoma regulatory network. The 10 genes are as follows: WNT5A, pirin, S100P, RET1, MMP3, PHOC, MART1, HADHB, synuclein, and STC2.

Source

Yousefi, Mohammadmahdi R., and Edward R. Dougherty. "Intervention in gene regulatory networks with maximal phenotype alteration."" Bioinformatics 29.14 (2013): 1758-1767.

Examples

data(melanoma)

data <- simulateNetwork(melanoma, n.data = 100, p = .02,
                      obsModel = list(type = 'Bernoulli', 
                                      q = 0.05))

BoolFilter documentation built on May 2, 2019, 1:27 p.m.