Heatmap_Cor: plot the heatmap of marker genes across different species

In CACIMAR: Cross-Species Analysis of Cell Identities, Markers and Regulations

plot the heatmap of marker genes across different species

Description

plot the heatmap of marker genes across different species

Usage

Heatmap_Cor(
  RNA1,
  RowType1 = "",
  ColType1 = "",
  cluster_cols = TRUE,
  cluster_rows = FALSE,
  Color1 = NULL,
  ...
)

Arguments

RNA1	correlation of expression in each cell type
RowType1	character, indicating the cell types that you want to show on the row in heatmap. RowType1=” means show all cell types
ColType1	character, indicating the cell types that you want to show on the column in heatmap. RowType1=” means show all cell types
cluster_cols	boolean values determining if columns should be clustered or hclust object
cluster_rows	boolean values determining if rows should be clustered or hclust object
Color1	vector of colors used in heatmap
...	parameter in pheatmap

Value

pheatmap object

Examples

load(system.file("extdata", "network_example.rda", package = "CACIMAR"))
n1 <- Identify_ConservedNetworks(OrthG_Mm_Zf,mmNetwork,zfNetwork,'mm','zf')
Heatmap_Cor(n1[[2]],cluster_cols=TRUE, cluster_rows=FALSE)

CACIMAR documentation built on May 18, 2022, 9:07 a.m.