Identify_ConservedNetworks: Identify conserved regulatory networks

In CACIMAR: Cross-Species Analysis of Cell Identities, Markers and Regulations

Identify conserved regulatory networks

Description

Use Score of Conserved network to identify conserved regulatory network modules based on homologous genes databased and topology of networks

Usage

Identify_ConservedNetworks(
  OrthG,
  Species1_GRN,
  Species2_GRN,
  Species_name1,
  Species_name2
)

Arguments

OrthG	ortholog genes database
Species1_GRN	gene regulatory network of species 1
Species2_GRN	gene regulatory network of species 2
Species_name1	character, indicating the species names of Species1_GRN
Species_name2	character, indicating the species names of Species2_GRN

Value

list contains two df. First df contains details of conserved regulatory network, second df contains NCS between module pairs

Examples

load(system.file("extdata", "gene_network.rda", package = "CACIMAR"))
n1 <- Identify_ConservedNetworks(OrthG_Mm_Zf,mm_gene_network,zf_gene_network,'mm','zf')

CACIMAR documentation built on May 18, 2022, 9:07 a.m.