Files in CASMAP
Detection of Statistically Significant Combinations of SNPs in Association Mapping
MD5
NAMESPACE
DESCRIPTION
build/vignette.rds
src/CumulativeTimeMeasurement.cpp
src/SignificantIntervalSearchChi.cpp
src/SignificantItemsetSearch.cpp
src/SignificantFeaturesSearch.cpp
src/FeatureSet.cpp
src/RcppExports.cpp
src/SignificantIntervalSearchExact.cpp
src/SignificantItemsetSearchFacs.cpp
src/SignificantFeaturesSearchTaroneCmh.cpp
src/SignificantIntervalSearchFais.cpp
src/gamma.cpp
src/SignificantIntervalSearch.cpp
src/Makevars
src/SignificantIntervalSearchFastCmh.cpp
src/PValues.cpp
src/pval.cpp
src/Genotype.cpp
src/sigpatsearch.cpp
src/Exception.cpp
src/Summary.cpp
src/Profiler.cpp
src/TransactionsData.cpp
src/SignificantFeaturesSearchWithCovariates.cpp
src/Phenotype.cpp
src/double_comp.cpp
src/ArrayFile.cpp
src/FilterIntervals.cpp
R/RcppExports.R
R/utils.R
R/zzz.R
R/data.R
R/wrapper.R
vignettes/intro.Rmd
man/getExampleCovariatesFilename.Rd
man/m_SignificantFeaturesSearch-class.Rd
man/lib_get_significant_itemsets.Rd
man/lib_execute_int.Rd
man/m_SignificantIntervalSearch-class.Rd
man/SignificantIntervalSearchExact-class.Rd
man/lib_get_filtered_intervals.Rd
man/lib_read_covariates_file_facs.Rd
man/getParentFunctionName.Rd
man/lib_write_eth_files_iset.Rd
man/lib_delete_search_fastcmh.Rd
man/m_SignificantFeaturesSearchWithCovariates-class.Rd
man/getExampleSignificantRegionsFilename.Rd
man/lib_read_plink_files_with_cov_fastcmh.Rd
man/lib_profiler_write_to_file.Rd
man/lib_get_result_iset.Rd
man/getRegionGWASString.Rd
man/SignificantItemsetSearchFacs-class.Rd
man/lib_new_search_e.Rd
man/SignificantIntervalSearchFastCmh-class.Rd
man/lib_read_plink_files_with_cov_facs.Rd
man/lib_write_eth_files_with_cov_fastcmh.Rd
man/CASMAP-class.Rd
man/getExampleDataFilename.Rd
man/lib_pvals_significant_isets_write_to_file.Rd
man/lib_summary_write_to_file_facs.Rd
man/getMinModeLength.Rd
man/lib_new_search_facs.Rd
man/lib_filter_intervals_write_to_file.Rd
man/lib_read_eth_files.Rd
man/getExampleLabelsFilename.Rd
man/lib_get_significant_intervals.Rd
man/lib_get_result_facs.Rd
man/lib_read_plink_files.Rd
man/lib_delete_search_facs.Rd
man/checkIsBoolean.Rd
man/SignificantIntervalSearchChi-class.Rd
man/isHigherOrderEpistasisString.Rd
man/lib_summary_write_to_file_fais.Rd
man/lib_write_eth_files_with_cov_facs.Rd
man/lib_write_eth_files_int.Rd
man/lib_get_result_int.Rd
man/lib_pvals_testable_isets_write_to_file.Rd
man/lib_pvals_testable_ints_write_to_file.Rd
man/lib_execute_iset.Rd
man/lib_read_eth_files_with_cov_facs.Rd
man/lib_read_covariates_file_fastcmh.Rd
man/lib_get_result_fais.Rd
man/lib_read_eth_files_with_cov_fastcmh.Rd
man/lib_pvals_significant_ints_write_to_file.Rd
man/isRegionGWASString.Rd
man/lib_new_search_fastcmh.Rd
man/lib_new_search_chi.Rd
man/CASMAPenv.Rd
man/lib_summary_write_to_file_fastcmh.Rd
man/isInOpenInterval.Rd
man/getHigherOrderEpistasisString.Rd
man/modeLengthErrorMessage.Rd
man/modeNeedsMoreChars.Rd
man/modeErrorMessage.Rd
man/m_SignificantIntervalSearchFais-class.Rd
man/lib_delete_search_e.Rd
man/m_SignificantItemsetSearch-class.Rd
man/lib_delete_search_chi.Rd
inst/doc/intro.R
inst/doc/intro.Rmd
inst/doc/intro.html
inst/extdata/CASMAP_example_labels_1.txt
inst/extdata/CASMAP_example_covariates_1.txt
inst/extdata/CASMAP_example_sig_regions_1.txt
inst/extdata/CASMAP_example_data_1.txt
inst/include/CASMAP.h
inst/include/pval.h
inst/include/Phenotype.h
inst/include/Summary.h
inst/include/SignificantFeaturesSearch.h
inst/include/FilterIntervals.h
inst/include/CumulativeTimeMeasurement.h
inst/include/SignificantFeaturesSearchWithCovariates.h
inst/include/gamma.h
inst/include/SignificantIntervalSearchFastCmh.h
inst/include/types.h
inst/include/ArrayFile.h
inst/include/FeatureSet.h
inst/include/chi2.h
inst/include/SignificantIntervalSearchExact.h
inst/include/PValues.h
inst/include/SignificantFeaturesSearchTaroneCmh.h
inst/include/Profiler.h
inst/include/SignificantIntervalSearchChi.h
inst/include/Genotype.h
inst/include/TransactionsData.h
inst/include/SignificantItemsetSearchFacs.h
inst/include/SignificantItemsetSearch.h
inst/include/double_comp.h
inst/include/SignificantIntervalSearch.h
inst/include/Exception.h
inst/include/mem_rss.h
inst/include/SignificantIntervalSearchFais.h
