Files in CDSeq

A Complete Deconvolution Method using Sequencing Data

NEWS.md README.md R/RcppExports.R R/intersection.R R/CDSeq.R R/cellTypeAssignMarkerGenes.R R/RNA2Cell.R R/pbmc_mix-data.R R/pbmc_CDSeq_estprop-data.R R/cellTypeAssignSCRNA.R R/data.R R/mixtureGEP-data.R R/trueGEPrpkm-data.R R/sc_gep-data.R R/cdseq_result3-data.R R/refGEP-data.R R/geneLength-data.R R/max_rep.R R/trueGEPgene-data.R R/sc_annotation-data.R R/pbmc_true_prop-data.R R/cdseq_result1-data.R R/Cell2RNA.R R/CDSeq-package.R R/gene2rpkm.R R/cellTypeRNAProp-data.R R/cdseq_result_pbmcmix-data.R R/cdseq_result2-data.R R/logpost.R R/cellTypeProp-data.R R/pbmc_ggplot-data.R R/cellTypeAssign.R R/read2gene.R R/trueGEPread-data.R inst/doc/CDSeq-vignette.R inst/doc/CDSeq-vignette.Rmd tests/testthat.R tests/testthat/test-cellTypeAssignSCRNA.R tests/testthat/test-CDSeq.R vignettes/CDSeq-vignette.Rmd man/CDSeq.Rd man/CDSeq-R-package.Rd man/true_GEP_rpkm.Rd man/cdseq.result.Rd man/true_prop_RNA.Rd man/gibbsSampler.Rd man/result3.Rd man/cellTypeAssignMarkerGenes.Rd man/pbmc_ggplot.Rd man/sc_annotation.Rd man/sc_gep.Rd man/merge_df.Rd man/gene2rpkm.Rd man/read2gene.Rd man/SyntheticMixtureData.Rd man/refGEP.Rd man/seedMT.Rd man/mixtureGEP.Rd man/true_GEP_read.Rd man/true_GEP_gene.Rd man/max_rep.Rd man/result2.Rd man/result1.Rd man/RNA2Cell.Rd man/true_prop_cell.Rd man/cellTypeAssign.Rd man/gene_length.Rd man/intersection.Rd man/Cell2RNA.Rd man/logpost.Rd man/true_prop.Rd man/hungarian_Rcpp.Rd man/cellTypeAssignSCRNA.Rd man/pbmc_mix.Rd