| add.OBIGT | Functions to Work with the Thermodynamic Database |
| add.protein | Amino Acid Compositions of Proteins |
| affinity | Chemical Affinities of Formation Reactions |
| basis | Define Basis Species |
| Berman | Thermodynamic Properties of Minerals |
| buffer | Calculating Buffered Chemical Activities |
| CHNOSZ-package | Thermodynamic Calculations and Diagrams for Geochemistry |
| DEW | Deep Earth Water (DEW) Model |
| diagram | Chemical Activity Diagrams |
| EOSregress | Regress Equations-of-State Parameters for Aqueous Species |
| equilibrate | Equilibrium Chemical Activities of Species |
| examples | Run Examples from the Documentation |
| extdata | Extra Data |
| IAPWS95 | Properties of Water from IAPWS-95 |
| info | Search the Thermodynamic Database |
| ionize.aa | Properties of Ionization of Proteins |
| logB.to.OBIGT | Fit Thermodynamic Parameters to Formation Constants (\logB) |
| makeup | Parse Chemical Formulas |
| mix | Combine Diagrams for Multi-Metal Systems |
| mosaic | Chemical Affinities with Changing Basis Species |
| NaCl | Simple NaCl-Water Solution |
| nonideal | Activity Coefficients of Aqueous Species |
| palply | Conditional Parallel Processing |
| protein.info | Summaries of Thermodynamic Properties of Proteins |
| rank.affinity | Average Ranks of Chemical Affinities |
| retrieve | Retrieve Species by Element |
| solubility | Equilibrium Chemical Activities of Species |
| species | Species of Interest |
| stack_mosaic | Stacked mosaic diagram |
| subcrt | Properties of Species and Reactions |
| swap.basis | Swap Basis Species |
| taxonomy | Extract Data from NCBI Taxonomy Files |
| thermo | Thermodynamic Database and System Settings |
| util.array | Functions to Work with Multidimensional Arrays |
| util.data | Functions for Checking Thermodynamic Data |
| util.expression | Functions to Express Chemical Formulas and Properties |
| util.fasta | Functions for Reading FASTA Files and Downloading from... |
| util.formula | Functions to Work with Chemical Formulas |
| util.legend | Functions to Make Legend Text |
| util.list | Functions to Work with Lists |
| util.misc | Functions for Miscellaneous Tasks |
| util.plot | Functions to Create and Modify Plots |
| util.protein | Functions for Proteins (Other Calculations) |
| util.seq | Functions to Work with Sequence Data |
| util.units | Functions to Convert Units |
| util.water | Functions for Properties of Water and Steam |
| water | Properties of Water |
