| add.OBIGT | Functions to Work with the Thermodynamic Database |
| add.protein | Amino acid compositions of proteins |
| affinity | Chemical affinities of formation reactions |
| basis | Define basis species |
| Berman | Thermodynamic properties of minerals |
| CHNOSZ-package | Thermodynamic calculations and diagrams for geochemistry |
| DEW | Deep Earth Water (DEW) model |
| diagram | Chemical activity diagrams |
| EOSregress | Regress equations-of-state parameters for aqueous species |
| equilibrate | Equilibrium chemical activities of species |
| examples | Run examples from the documentation |
| extdata | Extra data |
| IAPWS95 | Properties of water from IAPWS-95 |
| info | Search the thermodynamic database |
| ionize.aa | Properties of ionization of proteins |
| logK.to.OBIGT | Fit thermodynamic parameters to formation constants (\logK) |
| makeup | Parse chemical formulas |
| mix | Combine diagrams for multi-metal systems |
| mod.buffer | Calculating buffered chemical activities |
| mosaic | Chemical affinities with changing basis species |
| NaCl | Simple NaCl-water solution model |
| nonideal | Activity coefficients of aqueous species |
| palply | Conditional parallel processing |
| protein.info | Summaries of thermodynamic properties of proteins |
| rank.affinity | Average ranks of chemical affinities |
| retrieve | Retrieve species by element |
| solubility | Equilibrium chemical activities of species |
| species | Species of interest |
| stack_mosaic | Stacked mosaic diagram |
| subcrt | Properties of species and reactions |
| swap.basis | Swap basis species |
| taxonomy | Extract data from NCBI taxonomy files |
| thermo | Thermodynamic database and system settings |
| util.array | Functions to work with multidimensional arrays |
| util.data | Functions for checking thermodynamic data |
| util.expression | Functions to express chemical formulas and properties |
| util.formula | Functions to work with chemical formulas |
| util.legend | Functions to make legend text |
| util.list | Functions to work with lists |
| util.misc | Functions for miscellaneous tasks |
| util.plot | Functions to create and modify plots |
| util.protein | Functions for proteins (other calculations) |
| util.seq | Functions to work with sequence data |
| util.units | Functions to convert units |
| util.water | Functions for properties of water and steam |
| water | Properties of water |
