Files in CKMRpop
Forward-in-Time Simulation and Tallying of Pairwise Relationships
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/RcppExports.R
R/count_and_plot_ancestry_matrices.R
R/slurp_spip.R
R/gg_add_zone_perimeters.R
R/anc_match_masks.R
R/prepare_for_dfs.R
R/plot_amm_from_matrix.R
R/spip_help_full.R
R/spip_binary_path.R
R/data.R
R/ancestor_abbrvs.R
R/spip_help.R
R/summarize_survival_from_census.R
R/relpair_conn_comps.R
R/recapture_pairs.R
R/relationship_zone_perimeters.R
R/gg_add_generation_bands.R
R/cat_dom_relat.R
R/find_ancestors_and_relatives_of_samples.R
R/run_spip.R
R/leslie_from_spip.R
R/ggplot_census_by_year_age_sex.R
R/compile_related_pairs.R
R/install_spip.R
R/plot_conn_comps.R
R/import.R
R/downsample_pairs.R
R/uncooked_spaghetti.R
R/spip_exists.R
R/summarize_offspring_and_mate_numbers.R
R/count_and_plot_mate_distribution.R
R/spip_binary.R
R/amm2tibble.R
src/RcppExports.cpp
src/dfs_find_sampled_relatives.cpp
src/rcpp_test.cpp
src/primary_ancestor_pairs.cpp
inst/doc/species_1_simulation.Rmd
inst/doc/about_spip.R
inst/doc/species_1_simulation.html
inst/doc/about_spip.Rmd
inst/doc/species_1_simulation.R
inst/doc/simple-example-with-migration.html
inst/doc/simple-example-with-migration.R
inst/doc/about_spip.html
inst/doc/simple-example-with-migration.Rmd
inst/shell/single_pass_cps.awk
build/vignette.rds
vignettes/species_1_simulation.Rmd
vignettes/about_spip.Rmd
vignettes/simple-example-with-migration.Rmd
data/half_first_cousin_amm.rda
data/species_1_life_history.rda
data/three_pops_with_mig_slurped_results.rda
data/species_1_slurped_results_100_loci.rda
data/species_1_slurped_results_1gen.rda
data/relationship_zone_names.rda
data/example_amms.rda
data/three_pops_no_mig_slurped_results.rda
data/species_1_slurped_results.rda
data/species_2_life_history.rda
man/relationship_zone_names.Rd
man/search_up.Rd
man/install_spip.Rd
man/ancestor_vectors_cpp.Rd
man/slurp_spip.Rd
man/ggplot_census_by_year_age_sex.Rd
man/spip_binary.Rd
man/int_pow2.Rd
man/summarize_survival_from_census.Rd
man/basic_amm_plot.Rd
man/downsample_pairs.Rd
man/plot_amm_from_matrix.Rd
man/rcpp_ancestors_and_relatives.Rd
man/leslie_from_spip.Rd
man/spip_binary_path.Rd
man/find_ancestors_and_relatives_of_samples.Rd
man/recapture_pairs.Rd
man/search_down.Rd
man/plot_conn_comps.Rd
man/amm2tibble.Rd
man/species_1_slurped_results_1gen.Rd
man/three_pops_no_mig_slurped_results.Rd
man/cat_dom_relat.Rd
man/three_pops_with_mig_slurped_results.Rd
man/count_and_plot_ancestry_matrices.Rd
man/compile_related_pairs.Rd
man/example_amms.Rd
man/ancestor_abbrvs.Rd
man/run_spip.Rd
man/spip_exists.Rd
man/count_and_plot_mate_distribution.Rd
man/half_first_cousin_amm.Rd
man/species_1_slurped_results.Rd
man/gg_add_generation_bands.Rd
man/anc_match_masks.Rd
man/primary_ancestor_pairs.Rd
man/pipe.Rd
man/species_1_slurped_results_100_loci.Rd
man/species_2_life_history.Rd
man/uncooked_spaghetti.Rd
man/gg_add_zone_perimeters.Rd
man/relpair_conn_comps.Rd
man/spip_help_full.Rd
man/relationship_zone_perimeters.Rd
man/prepare_for_dfs.Rd
man/spip_help.Rd
man/summarize_offspring_and_mate_numbers.Rd
man/species_1_life_history.Rd
man/figures/spip-periods-with-sampling.svg
man/figures/CKMRpop-sticker.png
man/figures/spip-periods.svg
man/figures/spip-periods-with-migration.svg
