CLME: Constrained Inference for Linear Mixed Effects Models

Estimation and inference for linear models where some or all of the fixed-effects coefficients are subject to order restrictions. This package uses the robust residual bootstrap methodology for inference, and can handle some structure in the residual variance matrix.

Author
Casey M. Jelsema, Shyamal D. Peddada
Date of publication
2016-11-08 00:25:41
Maintainer
Casey M. Jelsema <jelsema.casey@gmail.com>
License
GPL-3
Version
2.0-6

View on CRAN

Man pages

AIC.clme
Akaike information criterion
as.clme
Constructor method for objects S3 class clme
BIC.clme
Bayesian information criterion
clme
Constrained Inference for Linear Mixed Effects Models
clme_em
Constrained EM algorithm for linear fixed or mixed effects...
CLME-package
Constrained inference for linear mixed models.
clme_resids
Computes various types of residuals
confint
Individual confidence intervals
create.constraints
Generate common order constraints
fibroid
Fibroid Growth Study
fixef.clme
Extract fixed effects
formula.clme
Extract formula
logLik.clme
Log-likelihood
lrt.stat
Likelihood ratio type statistic (global)
minque
MINQUE Algorithm
model.frame.clme
Extracts the model frame
model.matrix.clme
Extract the model design matrix.
model_terms_clme
Create model matrices for 'clme'
nobs.clme
Number of observations
plot.clme
S3 method to plot objects of class 'clme'
plot.summary.clme
S3 method to plot objects of class 'clme'
print.clme
Printout of fitted object.
print.summary.clme
S3 method to print a summary for objects of class 'clme'
print.varcorr_clme
Printout for variance components
ranef
Extract random effects
ranef.clme
Extract random effects
rat.blood
Experiment on mice
resid_boot
Obtain Residual Bootstrap
residuals.clme
Various types of residuals
shiny_clme
Shiny GUI for CLME
sigma.clme
Residual variance components
sigma.summary.clme
Residual variance components
summary.clme
Produce summary values for objects of class 'clme'
VarCorr
Variance components
vcov.clme
Variance-covariance matrix
w.stat
Williams' Type Test Statistic.

Files in this package

CLME
CLME/inst
CLME/inst/CITATION
CLME/NAMESPACE
CLME/NEWS
CLME/data
CLME/data/rat.blood.rda
CLME/data/fibroid.rda
CLME/R
CLME/R/clme.em.r
CLME/R/00Package.r
CLME/R/test.stat.r
CLME/R/clme_resids.r
CLME/R/plot.clme.r
CLME/R/clme.r
CLME/R/clme.em.mixed.r
CLME/R/shiny_clme.r
CLME/R/utilities.r
CLME/R/minque.r
CLME/R/create.constraints.r
CLME/R/summary_clme.r
CLME/R/resid_boot.r
CLME/R/clme.em.fixed.r
CLME/MD5
CLME/DESCRIPTION
CLME/man
CLME/man/print.summary.clme.Rd
CLME/man/print.clme.Rd
CLME/man/VarCorr.Rd
CLME/man/figures
CLME/man/figures/OrderPlot.jpg
CLME/man/shiny_clme.Rd
CLME/man/formula.clme.Rd
CLME/man/vcov.clme.Rd
CLME/man/plot.summary.clme.Rd
CLME/man/sigma.summary.clme.Rd
CLME/man/fixef.clme.Rd
CLME/man/w.stat.Rd
CLME/man/plot.clme.Rd
CLME/man/ranef.Rd
CLME/man/nobs.clme.Rd
CLME/man/print.varcorr_clme.Rd
CLME/man/residuals.clme.Rd
CLME/man/summary.clme.Rd
CLME/man/fibroid.Rd
CLME/man/model_terms_clme.Rd
CLME/man/confint.Rd
CLME/man/AIC.clme.Rd
CLME/man/clme_em.Rd
CLME/man/lrt.stat.Rd
CLME/man/CLME-package.Rd
CLME/man/create.constraints.Rd
CLME/man/resid_boot.Rd
CLME/man/clme.Rd
CLME/man/sigma.clme.Rd
CLME/man/model.frame.clme.Rd
CLME/man/minque.Rd
CLME/man/model.matrix.clme.Rd
CLME/man/ranef.clme.Rd
CLME/man/as.clme.Rd
CLME/man/rat.blood.Rd
CLME/man/BIC.clme.Rd
CLME/man/logLik.clme.Rd
CLME/man/clme_resids.Rd