COMMUNAL: Robust Selection of Cluster Number K

Facilitates optimal clustering of a data set. Provides a framework to run a wide range of clustering algorithms to determine the optimal number (k) of clusters in the data. Then analyzes the cluster assignments from each clustering algorithm to identify samples that repeatedly classify to the same group. We call these 'core clusters', providing a basis for later class discovery.

AuthorAlbert Chen [aut, cre], Timothy E Sweeney [aut], Olivier Gevaert [ths]
Date of publication2015-10-12 00:26:16
MaintainerAlbert Chen <acc2015@stanford.edu>
LicenseGPL-2
Version1.1.0

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Files in this package

COMMUNAL
COMMUNAL/inst
COMMUNAL/inst/CITATION
COMMUNAL/inst/tests
COMMUNAL/inst/tests/unittest.R
COMMUNAL/inst/doc
COMMUNAL/inst/doc/COMMUNAL.Rnw
COMMUNAL/inst/doc/COMMUNAL.R
COMMUNAL/inst/doc/COMMUNAL.pdf
COMMUNAL/tests
COMMUNAL/tests/runTestSuite.R
COMMUNAL/NAMESPACE
COMMUNAL/data
COMMUNAL/data/BRCA.results.RData
COMMUNAL/data/BRCA.100.RData
COMMUNAL/R
COMMUNAL/R/extract_core.R COMMUNAL/R/plot_range_3d.R COMMUNAL/R/communal.R COMMUNAL/R/test_range.R
COMMUNAL/vignettes
COMMUNAL/vignettes/COMMUNAL.Rnw
COMMUNAL/vignettes/COMMUNAL-concordance.tex
COMMUNAL/vignettes/snapshot.png
COMMUNAL/vignettes/framed.sty
COMMUNAL/MD5
COMMUNAL/build
COMMUNAL/build/vignette.rds
COMMUNAL/DESCRIPTION
COMMUNAL/man
COMMUNAL/man/measureMonotonic.Rd COMMUNAL/man/COMMUNAL.Rd COMMUNAL/man/plotRange3D.Rd COMMUNAL/man/COMMUNAL-class.Rd COMMUNAL/man/clusterKeys.Rd COMMUNAL/man/clusterRange.Rd COMMUNAL/man/BRCA.results.Rd COMMUNAL/man/COMMUNAL-package.Rd COMMUNAL/man/testAlgsMinSize.Rd COMMUNAL/man/returnCore.Rd COMMUNAL/man/BRCA.100.Rd COMMUNAL/man/examineCounts.Rd

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