CSanalysis-matrix-matrix-character-method: Connectivity Score Analysis.

In CSFA: Connectivity Scores with Factor Analysis

Description

Doing a CS analysis, interactively generating graphs. See specific type for additional parameteres.
Types:

• Zhang and Gant

• MFA

• PCA

• Sparse MFA

• FABIA

Usage

## S4 method for signature 'matrix,matrix,character'
CSanalysis(querMat, refMat, type, ...)

Arguments

querMat	Query matrix (Rows = genes and columns = compounds)
refMat	Reference matrix
type	Type of Factor Analysis or Zhang & Gant ( "CSfabia", "CSmfa", "CSpca", "CSsmfa" or "CSzhang")
...	Additional parameters for analysis

Value

An object of the S4 Class CSresult-class.

Examples

data("dataSIM",package="CSFA")
Mat1 <- dataSIM[,c(1:6)]
Mat2 <- dataSIM[,-c(1:6)]

MFA_analysis <- CSanalysis(Mat1,Mat2,"CSmfa")
FABIA_analysis <- CSanalysis(Mat1,Mat2,"CSfabia")
ZHANG_analysis <- CSanalysis(Mat1,Mat2,"CSzhang")

CSFA documentation built on May 2, 2019, 7:30 a.m.