adjl_from_adjmat | From adjacency matrix to adjacency list |
adjl_from_progindex | Build the network from the already processed Progress Index... |
campari | Original campari run |
contract_mst | Compute the contraction of the leaves in the minimum spanning... |
gen_annotation | Compute the annotation of the progrex index |
gen_progindex | Compute the progress index along with parent and... |
mst_from_trj | Create the minimum spanning tree from time series |
sapphire_plot | Sapphire plot - plotting annotation and progrex index |
write.pdb.d | Writing a pdb file from trajectory matrix in R |
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