adjl_from_progindex: Build the network from the already processed Progress Index...

In CampaR1: Trajectory Analysis

Description

adjl_from_progindex is able to use the output file from original campari software (or the output file from gen_annotation) in order to generate again the minimum spanning tree.

Usage

adjl_from_progindex(prog_index_file)

Arguments

prog_index_file

Progress index file location. This should be of the kind "PROGIDX_000000000001.dat" (original campari) or "REPIX_000000000001.dat" (CampaR1).

Details

For details, please refer to the main documentation of the original campari software http://campari.sourceforge.net/documentation.html

Value

adjl_from_progindex will return a minimum spanning tree: degree list, connectivity matrix and weights

See Also

gen_progindex, gen_annotation

Examples

## Not run: 
adjl <- adjl_from_progindex(fil = "PROGIDX_000000000001.dat")

## End(Not run)

CampaR1 documentation built on May 30, 2017, 2:51 a.m.