Cascade-package: Cascade: Selection, Reverse-Engineering and Prediction in...

In Cascade: Selection, Reverse-Engineering and Prediction in Cascade Networks

Cascade: Selection, Reverse-Engineering and Prediction in Cascade Networks

Description

A modeling tool allowing gene selection, reverse engineering, and prediction in cascade networks. Jung, N., Bertrand, F., Bahram, S., Vallat, L., and Maumy-Bertrand, M. (2014) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1093/bioinformatics/btt705")}.

Author(s)

This package has been written by Frédéric Bertrand, Myriam Maumy-Bertrand and Nicolas Jung with biological insights from Laurent Vallat. Maintainer: Frédéric Bertrand <[e-mail]>

References

Jung, N., Bertrand, F., Bahram, S., Vallat, L., and Maumy-Bertrand, M. (2014). Cascade: a R-package to study, predict and simulate the diffusion of a signal through a temporal gene network. Bioinformatics, btt705.

Vallat, L., Kemper, C. A., Jung, N., Maumy-Bertrand, M., Bertrand, F., Meyer, N., ... & Bahram, S. (2013). Reverse-engineering the genetic circuitry of a cancer cell with predicted intervention in chronic lymphocytic leukemia. Proceedings of the National Academy of Sciences, 110(2), 459-464.

See Also

Useful links:

• https://fbertran.github.io/Cascade/

• https://github.com/fbertran/Cascade/

• Report bugs at https://github.com/fbertran/Cascade/issues/

Cascade documentation built on Nov. 5, 2025, 6:47 p.m.