CeRNASeek: Identification and Analysis of ceRNA Regulation

Provides several functions to identify and analyse miRNA sponge, including popular methods for identifying miRNA sponge interactions, two types of global ceRNA regulation prediction methods and four types of context-specific prediction methods( Li Y et al.(2017) <doi:10.1093/bib/bbx137>), which are based on miRNA-messenger RNA regulation alone, or by integrating heterogeneous data, respectively. In addition, For predictive ceRNA relationship pairs, this package provides several downstream analysis algorithms, including regulatory network analysis and functional annotation analysis, as well as survival prognosis analysis based on expression of ceRNA ternary pair.

Package details

AuthorMengying Zhang,Yongsheng Li,Juan Xu*,Xia Li*
Bioconductor views GeneExpression Software competing endogenous RNA (ceRNA) function triplet
MaintainerMengying Zhang <[email protected]>
LicenseGPL-3
Version2.1
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("CeRNASeek")

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CeRNASeek documentation built on July 20, 2019, 9:03 a.m.