Description Usage Arguments Details Value Examples
The ceRNA function is used to identify the miRNAs that co-regulate the gene pairs of interest. The users can input the genes of interest. Otherwise, all the paired genes were calculated the number of co-regulating miRNAs.
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miRtar |
A data frame representing the relationship between miRNA and target. The data frame contains the name of the miRNA and target regulatory relationship. |
targetce |
a character string (vector) specifying candidate target name to analyse (default (targetce = NULL)). |
Note:All the arguments without default value must be assigned.
A list of identified miRNAs that co-regulate the gene pairs containing following components:
ceRNA
identify the miRNAs that co-regulate the gene pairs of interest,List all possible
ceRNA interactions,a 4 columns dataframe as following:
targetce
represented target names,respectively.
anotherce
names of modulators that another possible target(modulators) constitutes a ceRNA interaction relation.
miRNAs
names of miRNA shared by two targets.
miRNAs_num
number of miRNAs shared by two targets.
miR_l
Number of miRNAs interacting with each target in the input file.
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