ceRNA.app: identify the miRNAs that co-regulate the gene pairs of...

Description Usage Arguments Details Value Examples

View source: R/ceRNA.app.R

Description

The ceRNA function is used to identify the miRNAs that co-regulate the gene pairs of interest. The users can input the genes of interest. Otherwise, all the paired genes were calculated the number of co-regulating miRNAs.

Usage

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ceRNA.app(miRtar, targetce = NULL)

Arguments

miRtar

A data frame representing the relationship between miRNA and target. The data frame contains the name of the miRNA and target regulatory relationship.

targetce

a character string (vector) specifying candidate target name to analyse (default (targetce = NULL)).

Details

Note:All the arguments without default value must be assigned.

Value

A list of identified miRNAs that co-regulate the gene pairs containing following components:

Examples

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##Here we take the regulatory relationship between six genes and 71 miRNAs.

ceRNA.app(dataset[["miRtar"]],targetce=NULL)

CeRNASeek documentation built on April 29, 2020, 9:37 a.m.