API for Claddis
Measuring Morphological Diversity and Evolutionary Tempo
| Global functions | |
|---|---|
| Claddis | Man page |
| Claddis-package | Man page |
| add_polymorphisms_to_costmatrix | Man page Source code |
| add_uncertainties_to_costmatrix | Man page Source code |
| align_matrix_block | Man page Source code |
| assign_taxa_to_bins | Man page Source code |
| bin_changes | Man page Source code |
| bin_character_completeness | Man page Source code |
| bin_edge_lengths | Man page Source code |
| build_cladistic_matrix | Man page Source code |
| calculate_MPD | Man page Source code |
| calculate_WMPD | Man page Source code |
| calculate_g | Man page Source code |
| calculate_gmax | Man page Source code |
| calculate_kardashian_index | Man page Source code |
| calculate_morphological_distances | Man page Source code |
| calculate_tree_length | Man page Source code |
| check_cladisticMatrix | Man page Source code |
| check_costMatrix | Man page Source code |
| check_stateGraph | Man page Source code |
| check_taxonGroups | Man page Source code |
| check_timeBins | Man page Source code |
| classify_costmatrix | Man page Source code |
| compactify_cladistic_matrix | Man page Source code |
| convert_adjacency_matrix_to_costmatrix | Man page Source code |
| convert_costmatrix_to_stategraph | Man page Source code |
| convert_state_tree_to_adjacency_matrix | Man page Source code |
| convert_stategraph_to_costmatrix | Man page Source code |
| count_cherries | Man page Source code |
| date_nodes | Man page Source code |
| day_2016 | Man page |
| drop_time_tip | Man page Source code |
| estimate_ancestral_states | Man page Source code |
| estimate_squared_change_ancestors | Man page Source code |
| find_costmatrix_minimum_span | Man page Source code |
| find_descendant_edges | Man page Source code |
| find_linked_edges | Man page Source code |
| find_minimum_spanning_edges | Man page Source code |
| find_mrca | Man page Source code |
| find_shortest_costmatrix_path | Man page Source code |
| find_stategraph_minimum_span | Man page Source code |
| find_time_bin_midpoints | Man page Source code |
| find_unique_trees | Man page Source code |
| fix_costmatrix | Man page Source code |
| fix_root_time | Man page Source code |
| gauthier_1986 | Man page |
| is.cladisticMatrix | Man page Source code |
| is.costMatrix | Man page Source code |
| is.stateGraph | Man page Source code |
| is.taxonGroups | Man page Source code |
| is.timeBins | Man page Source code |
| is_graph_connected | Man page Source code |
| locate_bracket_positions | Man page Source code |
| make_costmatrix | Man page Source code |
| make_labels | Man page Source code |
| map_dollo_changes | Man page Source code |
| match_tree_edges | Man page Source code |
| michaux_1989 | Man page |
| ordinate_cladistic_matrix | Man page Source code |
| partition_time_bins | Man page Source code |
| permute_all_polymorphisms | Man page Source code |
| permute_all_treeshape_labellings | Man page Source code |
| permute_all_uncertainties | Man page Source code |
| permute_connected_graphs | Man page Source code |
| permute_costmatrices | Man page Source code |
| permute_graph_splits | Man page Source code |
| permute_restricted_compositions | Man page Source code |
| permute_tipstates | Man page Source code |
| permute_treeshapes | Man page Source code |
| plot_changes_on_tree | Man page Source code |
| plot_chronophylomorphospace | Man page Source code |
| plot_morphospace | Man page Source code |
| plot_morphospace_stack | Man page Source code |
| plot_multi_morphospace | Man page Source code |
| plot_rates_character | Man page Source code |
| plot_rates_time | Man page Source code |
| plot_rates_tree | Man page Source code |
| print.cladisticMatrix | Man page Source code |
| print.costMatrix | Man page Source code |
| print.stateGraph | Man page Source code |
| print.taxonGroups | Man page Source code |
| print.timeBins | Man page Source code |
| prune_cladistic_matrix | Man page Source code |
| read_nexus_matrix | Man page Source code |
| reconstruct_ancestral_states | Man page Source code |
| safe_taxonomic_reduction | Man page Source code |
| safe_taxonomic_reinsertion | Man page Source code |
| split_out_subgraphs | Man page Source code |
| test_rates | Man page Source code |
| trim_marginal_whitespace | Man page Source code |
| trim_matrix | Man page Source code |
| write_nexus_matrix | Man page Source code |
| write_tnt_matrix | Man page Source code |
