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ClustAssess: Tools for Assessing Clustering
A set of tools for evaluating clustering robustness using proportion of ambiguously clustered pairs (Senbabaoglu et al. (2014) <doi:10.1038/srep06207>), as well as similarity across methods and method stability using element-centric clustering comparison (Gates et al. (2019) <doi:10.1038/s41598-019-44892-y>). Additionally, this package enables stability-based parameter assessment for graph-based clustering pipelines typical in single-cell data analysis.
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Package details |
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| Author | Andi Munteanu [aut, cre], Arash Shahsavari [aut], Rafael Kollyfas [ctb], Miguel Larraz Lopez de Novales [aut], Liviu Ciortuz [ctb], Irina Mohorianu [aut] |
| Bioconductor views | ATACSeq Annotation Classification Clustering DifferentialExpression DimensionReduction GeneExpression Normalization Preprocessing QualityControl RNASeq SingleCell Software Visualization |
| Maintainer | Andi Munteanu <am3019@cam.ac.uk> |
| License | MIT + file LICENSE |
| Version | 1.0.0 |
| URL | https://github.com/Core-Bioinformatics/ClustAssess https://core-bioinformatics.github.io/ClustAssess/ |
| Package repository | View on CRAN |
| Installation |
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