genotype1: 'genotype1' is a data frame of genotype data with 'ploidy =...

In ClustMMDD: Variable Selection in Clustering by Mixture Models for Discrete Data

Description

A simulated data frame of genotype data with N = 1000 individuals genotyped at P = 10 loci. Each string represents two alleles : ploidy = 2. For example, "109107" represents ≤ft\{"109", "107"\right\}. The last column of the data frame contains integers that represent the population membership.

Format

The format is: chr [1:1000, 1:10] "109107" "105101" "106106" ... and the 11 th column contains integers representing the prior classification in 5 sub-populations.

Author(s)

Wilson Toussile

References

• Dominique Bontemps and Wilson Toussile (2013) : Clustering and variable selection for categorical multivariate data. Electronic Journal of Statistics, Volume 7, 2344-2371, ISSN.

• Wilson Toussile and Elisabeth Gassiat (2009) : Variable selection in model-based clustering using multilocus genotype data. Adv Data Anal Classif, Vol 3, number 2, 109-134.

See Also

genotype2

Examples

data(genotype1)
head(genotype1)

ClustMMDD documentation built on May 2, 2019, 2:44 p.m.