Compare_VertexClasses_sharedEdgeFeatures: Table VertexClass pairs of shared Edge Features

In CoNI: Correlation Guided Network Integration (CoNI)

Description

Compare VertexClass pairs of the shared Edge Features of two treatments (e.g., lipid-class-pairs per shared gene)

Usage

Compare_VertexClasses_sharedEdgeFeatures(
  Treat1_path,
  Treat2_path,
  OutputName = "Shared_Genes_and_Edges_Treat1vsTreat2.csv",
  Treat1Name = "Treat1",
  Treat2Name = "Treat2"
)

Arguments

Treat1_path	TableForNetwork_file (file generated by CoNI) with path of Treatment 1
Treat2_path	TableForNetwork_file (file generated by CoNI) with path of Treatment 2
OutputName	Output file name with path
Treat1Name	Name of treatment one, default Treat1
Treat2Name	Name of treatment one, default Treat2

Value

A data.frame with all possible vertex-class pairs and their numbers per edge-feature and treatment.

Examples

#For an example see the vignette

CoNI documentation built on Sept. 30, 2021, 5:09 p.m.