# NetStats: Network Statistics In CoNI: Correlation Guided Network Integration (CoNI)

## Description

This function calculates simple network statistics and returns them as a dataframe

## Usage

 `1` ```NetStats(Network) ```

## Arguments

 `Network` An Igraph network

## Value

Returns a data.frame with nine rows with the following network statistics:

• "net_avg_pathL"Shortest paths between vertices

• "net_edge_density"Graph density, ratio of the number of edges and the number of possible edges

• "net_transitivity"Probability that the adjacent vertices of a vertex are connected

• "net_diameter"Length of the longest geodesic

• "net_nodes_first_path_diameter"The nodes along the first found path with the length of diameter

• "net_eigenvalue"The eigenvalue corresponding to the centrality scores.

• "net_centralized_betweenessIdx"The graph level centrality index after centralizing the graph according to the betweenness of vertices

• "net_centralized_closenessIdx"The graph level centrality index after centralizing the graph according to the closeness of vertices

• "net_centralized_degreeIdx"The graph level centrality index after centralizing the graph according to the degrees of vertices

 ``` 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15``` ```#Load color nodes table data(MetColorTable) #Assign colors according to "Class" column MetColorTable<-assign_colorsAnnotation(MetColorTable) #Load CoNI results data(CoNIResultsHFDToy) #Generate Network HFDNetwork<-generate_network(ResultsCoNI = CoNIResultsHFDToy, colorVertexNetwork = TRUE, colorVertexTable = MetColorTable, outputDir = "./", outputFileName = "HFD", saveFiles = FALSE) NetStats(HFDNetwork) ```