CollocInfer: Collocation Inference for Dynamic Systems

Share:

These functions implement collocation-inference for continuous-time and discrete-time stochastic processes. They provide model-based smoothing, gradient-matching, generalized profiling and forwards prediction error methods.

Author
Giles Hooker <gjh27@cornell.edu>, Luo Xiao <lx42@cornell.edu>, James Ramsay <ramsay@psych.mcgill.ca>
Date of publication
2016-11-07 08:12:33
Maintainer
Giles Hooker <gjh27@cornell.edu>
License
GPL (>= 2)
Version
1.0.4
URLs

View on CRAN

Man pages

SplineCoefs
Spline Estimation Functions

Files in this package

CollocInfer
CollocInfer/TODO
CollocInfer/inst
CollocInfer/inst/trymcmc.r
CollocInfer/inst/todo.txt
CollocInfer/inst/CITATION
CollocInfer/inst/OldDemo
CollocInfer/inst/OldDemo/CircleEx.r
CollocInfer/inst/OldDemo/HenonEx.R
CollocInfer/inst/OldDemo/FhNEx.Jim.r
CollocInfer/inst/OldDemo/Circle.r
CollocInfer/inst/OldDemo/SEIREX.r
CollocInfer/inst/OldDemo/gillespieInc.csv
CollocInfer/inst/OldDemo/FhNEx3.R
CollocInfer/inst/OldDemo/FhN.diagnostics.R
CollocInfer/inst/OldDemo/exp2fhn.r
CollocInfer/inst/OldDemo/FhNEx2.r
CollocInfer/inst/OldDemo/gillespie.r
CollocInfer/inst/OldDemo/ChemoData2.rda
CollocInfer/inst/OldDemo/FhNEx4.R
CollocInfer/inst/OldDemo/FhNEx.R
CollocInfer/inst/MatlabCollocInfer
CollocInfer/inst/MatlabCollocInfer/make_Cproc.m
CollocInfer/inst/MatlabCollocInfer/dataformat.m
CollocInfer/inst/MatlabCollocInfer/demos
CollocInfer/inst/MatlabCollocInfer/demos/ChemoStatDemo.m
CollocInfer/inst/MatlabCollocInfer/demos/SEIRdata.txt
CollocInfer/inst/MatlabCollocInfer/demos/SEIRDemo.m
CollocInfer/inst/MatlabCollocInfer/demos/ChemoStatDemo_new.m
CollocInfer/inst/MatlabCollocInfer/demos/SEIRdemo_Routput.txt
CollocInfer/inst/MatlabCollocInfer/demos/groundwater.m
CollocInfer/inst/MatlabCollocInfer/demos/ChemoData.txt
CollocInfer/inst/MatlabCollocInfer/demos/NSdata.txt
CollocInfer/inst/MatlabCollocInfer/demos/ChemoStatDemo_old.m
CollocInfer/inst/MatlabCollocInfer/demos/ChemoStatDemo_new.asv
CollocInfer/inst/MatlabCollocInfer/demos/ChemoStatDemo_tmp.m
CollocInfer/inst/MatlabCollocInfer/demos/demos.m
CollocInfer/inst/MatlabCollocInfer/demos/NSdemo.m
CollocInfer/inst/MatlabCollocInfer/demos/groundwater.txt
CollocInfer/inst/MatlabCollocInfer/demos/FhNDemo.m
CollocInfer/inst/MatlabCollocInfer/demos/rainfall.txt
CollocInfer/inst/MatlabCollocInfer/demos/SEIRcoefs2.txt
CollocInfer/inst/MatlabCollocInfer/demos/demos.r
CollocInfer/inst/MatlabCollocInfer/ssefunctions_tmp.m
CollocInfer/inst/MatlabCollocInfer/SSE
CollocInfer/inst/MatlabCollocInfer/SSE/dSSE_dp.m
CollocInfer/inst/MatlabCollocInfer/SSE/make_SSEproc.m
CollocInfer/inst/MatlabCollocInfer/SSE/d2SSE_proc_dc2.m
CollocInfer/inst/MatlabCollocInfer/SSE/d2SSE_dydp.m
CollocInfer/inst/MatlabCollocInfer/SSE/dSSE_proc_dp.m
CollocInfer/inst/MatlabCollocInfer/SSE/dSSE_dy.m
CollocInfer/inst/MatlabCollocInfer/SSE/d2SSE_dy2.m
CollocInfer/inst/MatlabCollocInfer/SSE/d2SSE_dxdp.m
CollocInfer/inst/MatlabCollocInfer/SSE/d2SSE_dxdy.m
CollocInfer/inst/MatlabCollocInfer/SSE/SSE_proc.m
CollocInfer/inst/MatlabCollocInfer/SSE/dSSE_proc_dc.m
CollocInfer/inst/MatlabCollocInfer/SSE/make_SSElik.m
CollocInfer/inst/MatlabCollocInfer/SSE/d2SSE_proc_dcdp.m
CollocInfer/inst/MatlabCollocInfer/SSE/d2SSE_dx2.m
CollocInfer/inst/MatlabCollocInfer/SSE/dSSE_dx.m
CollocInfer/inst/MatlabCollocInfer/SSE/SSE.m
CollocInfer/inst/MatlabCollocInfer/Henon
CollocInfer/inst/MatlabCollocInfer/Henon/make_Henon.m
CollocInfer/inst/MatlabCollocInfer/outeropt.m
CollocInfer/inst/MatlabCollocInfer/SEIRdata.txt
CollocInfer/inst/MatlabCollocInfer/SplineCoefs.m
CollocInfer/inst/MatlabCollocInfer/Profile_multinorm.m
CollocInfer/inst/MatlabCollocInfer/blocks2mat.m
CollocInfer/inst/MatlabCollocInfer/Smooth_LS.m
CollocInfer/inst/MatlabCollocInfer/exptrans
CollocInfer/inst/MatlabCollocInfer/exptrans/exptrans_d2fdxd.m
CollocInfer/inst/MatlabCollocInfer/exptrans/exptrans_dfd.m
CollocInfer/inst/MatlabCollocInfer/exptrans/exptrans_dfdx.m
CollocInfer/inst/MatlabCollocInfer/exptrans/exptrans_fun.m
CollocInfer/inst/MatlabCollocInfer/exptrans/make_exptrans.m
CollocInfer/inst/MatlabCollocInfer/exptrans/exptrans_d2fdx2.m
CollocInfer/inst/MatlabCollocInfer/exptrans/exptrans_dfdp.m
CollocInfer/inst/MatlabCollocInfer/ProfileCovariance.asv
CollocInfer/inst/MatlabCollocInfer/FHNtry.m
CollocInfer/inst/MatlabCollocInfer/make_cvar.m
CollocInfer/inst/MatlabCollocInfer/applysum.m
CollocInfer/inst/MatlabCollocInfer/ParsMatch.m
CollocInfer/inst/MatlabCollocInfer/checkmore_genlin.m
CollocInfer/inst/MatlabCollocInfer/FitMatchOpt.m
CollocInfer/inst/MatlabCollocInfer/CollocInferPlots.asv
CollocInfer/inst/MatlabCollocInfer/inneropt.m
CollocInfer/inst/MatlabCollocInfer/logstate_lik
CollocInfer/inst/MatlabCollocInfer/logstate_lik/logstate_lik_d2fdx2.m
CollocInfer/inst/MatlabCollocInfer/logstate_lik/make_logstate_lik.m
CollocInfer/inst/MatlabCollocInfer/logstate_lik/logstate_lik_dfdx.m
CollocInfer/inst/MatlabCollocInfer/logstate_lik/logstate_lik_dfdp.m
CollocInfer/inst/MatlabCollocInfer/logstate_lik/logstate_lik_fun.m
CollocInfer/inst/MatlabCollocInfer/logstate_lik/logstate_lik_d2fdxdp.m
CollocInfer/inst/MatlabCollocInfer/CollocInfer.m
CollocInfer/inst/MatlabCollocInfer/CollocInferUtility.m
CollocInfer/inst/MatlabCollocInfer/checkmore_cvar.m
CollocInfer/inst/MatlabCollocInfer/findif_var_d2fdxdp.m
CollocInfer/inst/MatlabCollocInfer/findif
CollocInfer/inst/MatlabCollocInfer/findif/make_findif_loglik.m
CollocInfer/inst/MatlabCollocInfer/findif/make_findif_var.m
CollocInfer/inst/MatlabCollocInfer/findif/findif_var_fun.m
CollocInfer/inst/MatlabCollocInfer/findif/findif_loglik_fun.m
CollocInfer/inst/MatlabCollocInfer/findif/findif_loglik_d2fdx2.m
CollocInfer/inst/MatlabCollocInfer/findif/findif_ode_dfdp.m
CollocInfer/inst/MatlabCollocInfer/findif/findif_ode_d2fdx2.m
CollocInfer/inst/MatlabCollocInfer/findif/findif_ode_fn.m
CollocInfer/inst/MatlabCollocInfer/findif/findif_var_dfdx.m
CollocInfer/inst/MatlabCollocInfer/findif/findif_ode_d2fdxdp.m
CollocInfer/inst/MatlabCollocInfer/findif/findif_ode_dfdx.m
CollocInfer/inst/MatlabCollocInfer/findif/make_findif_ode.m
CollocInfer/inst/MatlabCollocInfer/findif/findif_loglik_d2fdy2.m
CollocInfer/inst/MatlabCollocInfer/findif/findif_loglik_dfdp.m
CollocInfer/inst/MatlabCollocInfer/findif/findif_loglik_d2fdxdy.m
CollocInfer/inst/MatlabCollocInfer/findif/findif_var_dfdp.m
CollocInfer/inst/MatlabCollocInfer/findif/findif_var_d2fdx2.m
CollocInfer/inst/MatlabCollocInfer/findif/findif_loglik_d2fdxdp.m
CollocInfer/inst/MatlabCollocInfer/findif/findif_loglik_dfdy.m
CollocInfer/inst/MatlabCollocInfer/findif/findif_loglik_d2fdydp.m
CollocInfer/inst/MatlabCollocInfer/findif/findif_loglik_dfdx.m
CollocInfer/inst/MatlabCollocInfer/ProfileErr.m
CollocInfer/inst/MatlabCollocInfer/fhn
CollocInfer/inst/MatlabCollocInfer/fhn/fhn_d2fdx2.m
CollocInfer/inst/MatlabCollocInfer/fhn/fhn_fun_ode.m
CollocInfer/inst/MatlabCollocInfer/fhn/fhn_dfdx.m
CollocInfer/inst/MatlabCollocInfer/fhn/fhn_d2fdxdp.m
CollocInfer/inst/MatlabCollocInfer/fhn/fhn_dfdp.m
CollocInfer/inst/MatlabCollocInfer/fhn/fhn_fun.m
CollocInfer/inst/MatlabCollocInfer/fhn/make_fhn.m
CollocInfer/inst/MatlabCollocInfer/ChemoStat
CollocInfer/inst/MatlabCollocInfer/ChemoStat/chemo_obs.m
CollocInfer/inst/MatlabCollocInfer/ChemoStat/chemo_fun.m
CollocInfer/inst/MatlabCollocInfer/ChemoStat/chemo_ode.m
CollocInfer/inst/MatlabCollocInfer/ChemoStat/chemo_fun_tmp.m
CollocInfer/inst/MatlabCollocInfer/LS_setup.m
CollocInfer/inst/MatlabCollocInfer/exp_d2Dproc_dcdp.m
CollocInfer/inst/MatlabCollocInfer/oderhs.m
CollocInfer/inst/MatlabCollocInfer/IntegrateForward.m
CollocInfer/inst/MatlabCollocInfer/id
CollocInfer/inst/MatlabCollocInfer/id/id_d2fdx2.m
CollocInfer/inst/MatlabCollocInfer/id/id_dfdp.m
CollocInfer/inst/MatlabCollocInfer/id/id_dfdx.m
CollocInfer/inst/MatlabCollocInfer/id/id_d2fdxdp.m
CollocInfer/inst/MatlabCollocInfer/id/id_fn.m
CollocInfer/inst/MatlabCollocInfer/id/make_id.m
CollocInfer/inst/MatlabCollocInfer/ProfileErr_AllPar.m
CollocInfer/inst/MatlabCollocInfer/genlin
CollocInfer/inst/MatlabCollocInfer/genlin/genlin_fun_ode.m
CollocInfer/inst/MatlabCollocInfer/genlin/genlin_dfdx.m
CollocInfer/inst/MatlabCollocInfer/genlin/make_genlin.m
CollocInfer/inst/MatlabCollocInfer/genlin/genlin_d2fdx2.m
CollocInfer/inst/MatlabCollocInfer/genlin/genlin_fn.m
CollocInfer/inst/MatlabCollocInfer/genlin/genlin_dfdp.m
CollocInfer/inst/MatlabCollocInfer/genlin/checkmore.m
CollocInfer/inst/MatlabCollocInfer/genlin/genlin_d2fdxdp.m
CollocInfer/inst/MatlabCollocInfer/exp
CollocInfer/inst/MatlabCollocInfer/exp/exp_dCproc_dp.m
CollocInfer/inst/MatlabCollocInfer/exp/exp_dfdx.m
CollocInfer/inst/MatlabCollocInfer/exp/exp_dDproc_dp.m
CollocInfer/inst/MatlabCollocInfer/exp/exp_Cproc.m
CollocInfer/inst/MatlabCollocInfer/exp/make_exp.m
CollocInfer/inst/MatlabCollocInfer/exp/exp_Dproc.m
CollocInfer/inst/MatlabCollocInfer/exp/exp_dfdp.m
CollocInfer/inst/MatlabCollocInfer/exp/exp_d2Dproc_dc2.m
CollocInfer/inst/MatlabCollocInfer/exp/exp_d2Cproc_dcdp.m
CollocInfer/inst/MatlabCollocInfer/exp/exp_d2fdx2.m
CollocInfer/inst/MatlabCollocInfer/exp/exp_fn.m
CollocInfer/inst/MatlabCollocInfer/exp/exp_d2Cproc_dc2.m
CollocInfer/inst/MatlabCollocInfer/exp/exp_dDproc_dc.m
CollocInfer/inst/MatlabCollocInfer/exp/make_exp_Dproc.m
CollocInfer/inst/MatlabCollocInfer/exp/exp_d2fdxdp.m
CollocInfer/inst/MatlabCollocInfer/exp/make_exp_Cproc.m
CollocInfer/inst/MatlabCollocInfer/exp/exp_dCproc_dc.m
CollocInfer/inst/MatlabCollocInfer/make_multinorm.m
CollocInfer/inst/MatlabCollocInfer/LS_setup.asv
CollocInfer/inst/MatlabCollocInfer/ParsMatchOpt.m
CollocInfer/inst/MatlabCollocInfer/FHNdata.txt
CollocInfer/inst/MatlabCollocInfer/CollocInferPlots.m
CollocInfer/inst/MatlabCollocInfer/NS
CollocInfer/inst/MatlabCollocInfer/NS/NS_d2fdxdp.m
CollocInfer/inst/MatlabCollocInfer/NS/NS_fn.m
CollocInfer/inst/MatlabCollocInfer/NS/NS_dfdx.m
CollocInfer/inst/MatlabCollocInfer/NS/NS_ode.m
CollocInfer/inst/MatlabCollocInfer/NS/NS_d2fdx2.m
CollocInfer/inst/MatlabCollocInfer/NS/NS_fun.m
CollocInfer/inst/MatlabCollocInfer/NS/NS_dfdp.m
CollocInfer/inst/MatlabCollocInfer/NS/make_NS.m
CollocInfer/inst/MatlabCollocInfer/Rcode
CollocInfer/inst/MatlabCollocInfer/Rcode/ProfileR.R
CollocInfer/inst/MatlabCollocInfer/Rcode/LS.setup.R
CollocInfer/inst/MatlabCollocInfer/Rcode/fhn.R
CollocInfer/inst/MatlabCollocInfer/Rcode/inneropt.R
CollocInfer/inst/MatlabCollocInfer/Rcode/SSElik.R
CollocInfer/inst/MatlabCollocInfer/Rcode/FHN.try.R
CollocInfer/inst/MatlabCollocInfer/Rcode/InnerOptimization.r
CollocInfer/inst/MatlabCollocInfer/Rcode/SSEproc.R
CollocInfer/inst/MatlabCollocInfer/Rcode/Smooth.LS.R
CollocInfer/inst/MatlabCollocInfer/Rcode/findif.var.R
CollocInfer/inst/MatlabCollocInfer/Rcode/Henon.R
CollocInfer/inst/MatlabCollocInfer/Rcode/Profile.LS.R
CollocInfer/inst/MatlabCollocInfer/Rcode/Cproc.R
CollocInfer/inst/MatlabCollocInfer/Rcode/logtrans.R
CollocInfer/inst/MatlabCollocInfer/Rcode/Dproc.R
CollocInfer/inst/MatlabCollocInfer/Rcode/makeid.R
CollocInfer/inst/MatlabCollocInfer/Rcode/SEIR.r
CollocInfer/inst/MatlabCollocInfer/Rcode/make.fhn.R
CollocInfer/inst/MatlabCollocInfer/Rcode/ls.shortcut.r
CollocInfer/inst/MatlabCollocInfer/Rcode/multinorm.shortcut.r
CollocInfer/inst/MatlabCollocInfer/Rcode/exp.Cproc.R
CollocInfer/inst/MatlabCollocInfer/Rcode/Diagnostics.R
CollocInfer/inst/MatlabCollocInfer/Rcode/findif.ode.R
CollocInfer/inst/MatlabCollocInfer/Rcode/makeexp.R
CollocInfer/inst/MatlabCollocInfer/Rcode/Multinorm.R
CollocInfer/inst/MatlabCollocInfer/Rcode/logstate.lik.R
CollocInfer/inst/MatlabCollocInfer/Rcode/cvar.R
CollocInfer/inst/MatlabCollocInfer/Rcode/findif.loglik.R
CollocInfer/inst/MatlabCollocInfer/Rcode/exp.Dproc.R
CollocInfer/inst/MatlabCollocInfer/Rcode/genlin.R
CollocInfer/inst/MatlabCollocInfer/checkweights.m
CollocInfer/inst/MatlabCollocInfer/ProfileSSE_AllPar.m
CollocInfer/inst/MatlabCollocInfer/FitMatchCoefs.m
CollocInfer/inst/MatlabCollocInfer/groundwater.txt
CollocInfer/inst/MatlabCollocInfer/make_Dproc.m
CollocInfer/inst/MatlabCollocInfer/FhNdata
CollocInfer/inst/MatlabCollocInfer/NorthShoreData.mat
CollocInfer/inst/MatlabCollocInfer/Profile_GausNewt.m
CollocInfer/inst/MatlabCollocInfer/ProfileSSE.m
CollocInfer/inst/MatlabCollocInfer/SEIR
CollocInfer/inst/MatlabCollocInfer/SEIR/SEIR_dfdp.m
CollocInfer/inst/MatlabCollocInfer/SEIR/SEIR_d2fdxdp.m
CollocInfer/inst/MatlabCollocInfer/SEIR/SEIR_dfdx.m
CollocInfer/inst/MatlabCollocInfer/SEIR/SEIR_fun.m
CollocInfer/inst/MatlabCollocInfer/SEIR/make_var_SEIR.m
CollocInfer/inst/MatlabCollocInfer/SEIR/SEIR_var_fun.m
CollocInfer/inst/MatlabCollocInfer/SEIR/SEIR_var_dfdx.m
CollocInfer/inst/MatlabCollocInfer/SEIR/SEIR_var_d2fdx2.m
CollocInfer/inst/MatlabCollocInfer/SEIR/SEIR_var_d2fdxdp.m
CollocInfer/inst/MatlabCollocInfer/SEIR/SEIR_var_dfdp.m
CollocInfer/inst/MatlabCollocInfer/SEIR/SEIR_d2fdx2.m
CollocInfer/inst/MatlabCollocInfer/SEIR/SEIR_ode.m
CollocInfer/inst/MatlabCollocInfer/SEIR/make_SEIR.m
CollocInfer/inst/MatlabCollocInfer/devel
CollocInfer/inst/MatlabCollocInfer/devel/ProfileCovariance.m
CollocInfer/inst/MatlabCollocInfer/coefsformat.m
CollocInfer/inst/MatlabCollocInfer/logtrans
CollocInfer/inst/MatlabCollocInfer/logtrans/make_logtrans.m
CollocInfer/inst/MatlabCollocInfer/logtrans/logtrans_dfdp.m
CollocInfer/inst/MatlabCollocInfer/logtrans/logtrans_d2fdx2.m
CollocInfer/inst/MatlabCollocInfer/logtrans/logtrans_dfdx.m
CollocInfer/inst/MatlabCollocInfer/logtrans/logtrans_d2fdxdp.m
CollocInfer/inst/MatlabCollocInfer/logtrans/logtrans_fun.m
CollocInfer/inst/MatlabCollocInfer/make_diagnostics.m
CollocInfer/inst/MatlabCollocInfer/ProfileErr_AllPar_scrap.m
CollocInfer/inst/MatlabCollocInfer/rainfall.txt
CollocInfer/inst/MatlabCollocInfer/SplineEst_NewtRaph.m
CollocInfer/inst/MatlabCollocInfer/loggenlin
CollocInfer/inst/MatlabCollocInfer/loggenlin/loggenlin_dfdx.m
CollocInfer/inst/MatlabCollocInfer/loggenlin/loggenlin_fun_ode.m
CollocInfer/inst/MatlabCollocInfer/loggenlin/loggenlin_d2fdxdp.m
CollocInfer/inst/MatlabCollocInfer/loggenlin/loggenlin_fn.m
CollocInfer/inst/MatlabCollocInfer/loggenlin/loggenlin_dfdp.m
CollocInfer/inst/MatlabCollocInfer/loggenlin/make_loggenlin.m
CollocInfer/inst/MatlabCollocInfer/loggenlin/loggenlin_d2fdx2.m
CollocInfer/inst/MatlabCollocInfer/loggenlin/checkmore.m
CollocInfer/inst/MatlabCollocInfer/FhNEx.m
CollocInfer/inst/MatlabCollocInfer/forward_prediction_error.m
CollocInfer/inst/MatlabCollocInfer/Profile_LS.m
CollocInfer/inst/MatlabCollocInfer/FHN_data.txt
CollocInfer/inst/OldCode
CollocInfer/inst/OldCode/sse.shortcut.R
CollocInfer/inst/OldCode/DE2x.R
CollocInfer/inst/OldCode/Dproc.shortcut.r
CollocInfer/inst/OldCode/DE2x.rd
CollocInfer/inst/OldCode/cproc.shortcut.r
CollocInfer/inst/Devel
CollocInfer/inst/Devel/Colloc.MCMCfixpar.r
CollocInfer/inst/Devel/make.proc.rd
CollocInfer/inst/Devel/Colloc.MCMC.R
CollocInfer/inst/Devel/testSRK2.r
CollocInfer/inst/Devel/pomp.interface.r
CollocInfer/inst/Devel/pomp.skeleton_test.r
CollocInfer/inst/Devel/profile.covariance.rep.rd
CollocInfer/inst/Devel/estep.r
CollocInfer/inst/Devel/Colloc.MCMC1.R
CollocInfer/inst/Devel/SEIR.r
CollocInfer/inst/Devel/EM.R
CollocInfer/inst/Devel/setup.rd
CollocInfer/inst/Devel/srk2.shortcut.r
CollocInfer/inst/Devel/EM.rd
CollocInfer/inst/Devel/ParsMatch.rep.rd
CollocInfer/inst/Devel/SRK2proc.r
CollocInfer/inst/Devel/Colloc.MCMC.rd
CollocInfer/inst/Devel/FitMatch.rep.rd
CollocInfer/inst/Devel/Colloc.MCMCtestoncoefs.r
CollocInfer/inst/Devel/SplineCoefs.rep.rd
CollocInfer/inst/Devel/datagenFhNex.r
CollocInfer/inst/Devel/EM.rep.rd
CollocInfer/inst/Devel/Profile.rep.rd
CollocInfer/inst/Devel.Examples
CollocInfer/inst/Devel.Examples/FhN.inputEx.R
CollocInfer/inst/Devel.Examples/SEIRRV.R
CollocInfer/inst/Devel.Examples/LynxHare2.dat
CollocInfer/inst/Devel.Examples/ChemoEx2.r
CollocInfer/inst/Devel.Examples/fhn.input.R
CollocInfer/inst/Devel.Examples/LVEX.R
CollocInfer/inst/Devel.Examples/LynxHare.dat
CollocInfer/inst/Devel.Examples/LV.R
CollocInfer/inst/Devel.Examples/pomp.sir.R
CollocInfer/inst/Devel.Examples/SEIRRVEX.R
CollocInfer/inst/CollocInferManual.pdf
CollocInfer/inst/trymcmc2.r
CollocInfer/NAMESPACE
CollocInfer/demo
CollocInfer/demo/RMEx.r
CollocInfer/demo/ChemoRMEx.r
CollocInfer/demo/OldDemo
CollocInfer/demo/OldDemo/RMEx.r
CollocInfer/demo/OldDemo/HenonEx.R
CollocInfer/demo/OldDemo/ChemoEx2.r
CollocInfer/demo/OldDemo/FhNEx2.r
CollocInfer/demo/OldDemo/FhNEx.R
CollocInfer/demo/ChemoEx.R
CollocInfer/demo/SEIREX.r
CollocInfer/demo/00Index
CollocInfer/demo/HenonEx.r
CollocInfer/demo/FhNEx2.r
CollocInfer/demo/FhN.diagnostics.r
CollocInfer/demo/NorthShore.R
CollocInfer/CHANGELOG
CollocInfer/NEWS
CollocInfer/data
CollocInfer/data/SEIRdata.rda
CollocInfer/data/NSdata.rda
CollocInfer/data/ChemoData.rda
CollocInfer/data/FhNdata.rda
CollocInfer/data/ChemoRMData.rda
CollocInfer/data/FhNest.rda
CollocInfer/R
CollocInfer/R/fhn.R
CollocInfer/R/SSElik.R
CollocInfer/R/SSEproc.R
CollocInfer/R/exptrans.r
CollocInfer/R/findif.var.R
CollocInfer/R/Henon.R
CollocInfer/R/pomp.skeleton.R
CollocInfer/R/Cproc.R
CollocInfer/R/logtrans.R
CollocInfer/R/check.lik.proc.data.coefs.r
CollocInfer/R/ParsMatchOptimization.R
CollocInfer/R/Dproc.R
CollocInfer/R/makeid.R
CollocInfer/R/SEIR.r
CollocInfer/R/NSfuns.R
CollocInfer/R/ls.shortcut.r
CollocInfer/R/multinorm.shortcut.r
CollocInfer/R/exp.Cproc.R
CollocInfer/R/forward.prediction.error.R
CollocInfer/R/IntegrateForward.R
CollocInfer/R/Diagnostics.R
CollocInfer/R/InnerOptimization.R
CollocInfer/R/findif.ode.R
CollocInfer/R/makeexp.R
CollocInfer/R/Multinorm.R
CollocInfer/R/CollocInferPlots.R
CollocInfer/R/Chemo.R
CollocInfer/R/FitMatchOptimization.R
CollocInfer/R/ProfileCovariance.R
CollocInfer/R/OuterOptimization.R
CollocInfer/R/logstate.lik.R
CollocInfer/R/cvar.R
CollocInfer/R/findif.loglik.R
CollocInfer/R/exp.Dproc.R
CollocInfer/R/genlin.R
CollocInfer/MD5
CollocInfer/DESCRIPTION
CollocInfer/man
CollocInfer/man/make.variance.rd
CollocInfer/man/make.lik.rd
CollocInfer/man/make.proc.rd
CollocInfer/man/make.findif.rd
CollocInfer/man/profile.covariance.rd
CollocInfer/man/FhNest.rd
CollocInfer/man/ParsMatch.rd
CollocInfer/man/outeropt.rd
CollocInfer/man/CollocInfer-package.rd
CollocInfer/man/FhNdata.rd
CollocInfer/man/make.logtrans.rd
CollocInfer/man/ChemoData.rd
CollocInfer/man/setup.rd
CollocInfer/man/ChemoRMData.rd
CollocInfer/man/inneropt.rd
CollocInfer/man/ProfileObjective.rd
CollocInfer/man/smooth.rd
CollocInfer/man/SplineCoefs.Rd
CollocInfer/man/CollocInferPlots.rd
CollocInfer/man/NSdata.rd
CollocInfer/man/CollocInfer-internal.rd
CollocInfer/man/SEIRdata.rd
CollocInfer/man/FitMatch.rd
CollocInfer/man/IntegrateForward.rd
CollocInfer/man/make.transform.rd
CollocInfer/man/Profile.rd
CollocInfer/man/forward.prediction.error.rd