upset_test: Test for differences between intersections

In ComplexUpset: Create Complex UpSet Plots Using 'ggplot2' Components

Description

This is a wrapper around compare_between_intersections(), adding sorting by FDR, warnings, etc.

Usage

upset_test(data, intersect, ...)

Arguments

data	a dataframe including binary columns representing membership in classes
intersect	which columns should be used to compose the intersection
...	Arguments passed on to compare_between_intersections test the default test function; it is expected to accept formula and data parameters, and a list with p.value, statistic, and method tests a named list with tests for specific variables, overwriting the default test ignore a list with names of variables to exclude from testing ignore_mode_columns whether the membership columns and size columns for all modes should be ignored mode region selection mode; note that modes other than exclusive_intersection repeat observations in different test group, introducing dependencies. See get_size_mode() for accepted values.

ComplexUpset documentation built on Dec. 11, 2021, 5:07 p.m.