compare_between_intersections: Compare covariates between intersections

In ComplexUpset: Create Complex UpSet Plots Using 'ggplot2' Components

Description

Compare covariates between intersections

Usage

compare_between_intersections(
  data,
  intersect,
  test = kruskal.test,
  tests = list(),
  ignore = list(),
  ignore_mode_columns = TRUE,
  mode = "exclusive_intersection",
  ...
)

Arguments

data	a dataframe including binary columns representing membership in classes
intersect	which columns should be used to compose the intersection
test	the default test function; it is expected to accept formula and data parameters, and a list with p.value, statistic, and method
tests	a named list with tests for specific variables, overwriting the default test
ignore	a list with names of variables to exclude from testing
ignore_mode_columns	whether the membership columns and size columns for all modes should be ignored
mode	region selection mode; note that modes other than exclusive_intersection repeat observations in different test group, introducing dependencies. See get_size_mode() for accepted values.
...	passed to upset_data()

ComplexUpset documentation built on Dec. 11, 2021, 5:07 p.m.