Corbi: Collection of Rudimentary Bioinformatics Tools

Provides a bundle of basic and fundamental bioinformatics tools, such as network querying and alignment, subnetwork extraction and search, network biomarker identification.

Install the latest version of this package by entering the following in R:
install.packages("Corbi")
AuthorLing-Yun Wu [aut, cre], Qiang Huang [aut], Duanchen Sun [aut]
Date of publication2016-09-20 18:46:37
MaintainerLing-Yun Wu <wulingyun@gmail.com>
LicenseGPL (>= 2)
Version0.4-1
https://github.com/wulingyun/Corbi

View on CRAN

Files

tests
tests/net_align
tests/net_align/answer1_uni.txt
tests/net_align/net1.txt
tests/net_align/answer1.txt
tests/net_align/sim.txt
tests/net_align/net2.txt
tests/net_align/net3.txt
tests/test_net_query.R tests/test_markrank.R
tests/markrank
tests/markrank/de_list.RData
tests/markrank/subnetwork.txt
tests/markrank/answer.RData
tests/markrank/dataset.RData
tests/markrank/search_net.R tests/test_net_align.R
tests/net_query
tests/net_query/target.txt
tests/net_query/answer1.txt
tests/net_query/query1.txt
tests/net_query/answer2.txt
tests/net_query/sim.txt
tests/net_query/query2.txt
src
src/ProAlign.cpp
src/misc.cpp
src/Subnets.cpp
src/misc.h
src/Corbi.cpp
src/Corbi.h
src/NetQuery.cpp
src/multihyper.cpp
NAMESPACE
R
R/utils.R R/net_functions.R R/net_align.R R/net_query_batch.R R/multihyper.R R/net_query.R R/subnets.R R/markrank.R R/pro_align.R R/Corbi-package.R
README.md
MD5
DESCRIPTION
man
man/write_net.Rd man/Corbi-package.Rd man/nnzero.Rd man/submatrix.Rd man/kappa_score.Rd man/get_shortest_distances.Rd man/rmultihyper.Rd man/column.Rd man/net_align.Rd man/extend_subnets.Rd man/best_subnets.Rd man/markrank.Rd man/get_subnets.Rd man/net_query.Rd man/read_net.Rd

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