CytoSimplex: Simplex Visualization of Cell Fate Similarity in Single-Cell Data

Create simplex plots to visualize the similarity between single-cells and selected clusters in a 1-/2-/3-simplex space. Velocity information can be added as an additional layer. See Liu J, Wang Y et al (2023) <doi:10.1093/bioinformatics/btaf119> for more details.

Package details

AuthorYichen Wang [aut, cre] (<https://orcid.org/0000-0003-4347-5199>), Jialin Liu [aut] (<https://orcid.org/0000-0002-9984-7695>), Joshua Welch [cph]
MaintainerYichen Wang <wayichen@umich.edu>
LicenseGPL-3
Version0.2.0
URL https://welch-lab.github.io/CytoSimplex/ https://github.com/welch-lab/CytoSimplex
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("CytoSimplex")

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CytoSimplex documentation built on June 8, 2025, 10:12 a.m.