readH5ADObsNames: Extract 'adata.obs_names' from an H5AD file
In CytoSimplex: Simplex Visualization of Cell Fate Similarity in Single-Cell Data
readH5ADObsNames R Documentation
Extract 'adata.obs_names' from an H5AD file
Description
It frequently happens that velocity analyses stored in H5AD files do not
contain the full raw count data suggested for CytoSimplex visualization.
Extracting the cell IDs (e.g. barcodes) helps matching the velocity data to
raw count data imported from other sources.
Usage
readH5ADObsNames(filename)
Arguments
filename
File path to the H5AD file.
Value
A character vector of cell IDs.
See Also
Other H5AD-reader:
readH5ADObsVar(),
readH5ADUnsSpMat(),
readVelocytoLoom()
Examples
## Not run:
h5adFile <- "path/to/analysis.h5ad"
cellIDs <- readH5ADObsNames(h5adFile)
## End(Not run)
CytoSimplex documentation built on June 8, 2025, 10:12 a.m.
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| readH5ADObsNames | R Documentation |
Extract 'adata.obs_names' from an H5AD file
Description
It frequently happens that velocity analyses stored in H5AD files do not contain the full raw count data suggested for CytoSimplex visualization. Extracting the cell IDs (e.g. barcodes) helps matching the velocity data to raw count data imported from other sources.
Usage
readH5ADObsNames(filename)
Arguments
filename |
File path to the H5AD file. |
Value
A character vector of cell IDs.
See Also
Other H5AD-reader:
readH5ADObsVar(),
readH5ADUnsSpMat(),
readVelocytoLoom()
Examples
## Not run:
h5adFile <- "path/to/analysis.h5ad"
cellIDs <- readH5ADObsNames(h5adFile)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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