API for CytoSimplex
Simplex Visualization of Cell Fate Similarity in Single-Cell Data
| Global functions | |
|---|---|
| .checkDotColor | Source code |
| .checkVertex | Source code |
| .colAlpha | Source code |
| .genCategCol | Source code |
| .getSCEData | Source code |
| .getSeuratData | Source code |
| .htmlbold | Source code |
| .normalize | Source code |
| .openH5AD | Source code |
| .plotQuat | Source code |
| .plotQuatPlotly | Source code |
| .plotTernGG | Source code |
| .plotTernPlotly | Source code |
| .plotlyColorscale | Source code |
| .plotly_formatCustomData | Source code |
| .scaleMinMax | Source code |
| `%||%` | Source code |
| `[.colorArg` | Source code |
| aggrVeloGraph | Source code |
| calcGridVelo | Source code |
| calcSim | Source code |
| cart2bary | Source code |
| colAggregateSum | Source code |
| colAggregateSum_dense | Source code |
| colAggregateSum_sparse | Source code |
| colNNZAggr | Source code |
| colNNZAggr_dense | Source code |
| colNNZAggr_sparse | Source code |
| colNormalize | Man page Source code |
| colNormalize.Seurat | Man page Source code |
| colNormalize.SingleCellExperiment | Man page Source code |
| colNormalize.default | Man page Source code |
| colNormalize.dgCMatrix | Man page Source code |
| colNormalize_dense | Source code |
| colRanking | Source code |
| computePval | Source code |
| computeUstat | Source code |
| cosineDist | Source code |
| cosine_dense | Source code |
| cosine_sparse | Source code |
| cpp_rank_matrix_dgc | Source code |
| euclideanDist | Source code |
| euclidean_dense | Source code |
| euclidean_sparse | Source code |
| getArrowEndCoord | Source code |
| ggColor | Source code |
| is.rawCounts | Source code |
| is_rawCounts_dense | Source code |
| is_rawCounts_sparse | Source code |
| plotBinary | Man page Source code |
| plotBinary.Seurat | Man page Source code |
| plotBinary.SingleCellExperiment | Man page Source code |
| plotBinary.default | Man page Source code |
| plotBinary.simMat | Man page Source code |
| plotQuaternary | Man page Source code |
| plotQuaternary.Seurat | Man page Source code |
| plotQuaternary.SingleCellExperiment | Man page Source code |
| plotQuaternary.default | Man page Source code |
| plotQuaternary.simMat | Man page Source code |
| plotTernary | Man page Source code |
| plotTernary.Seurat | Man page Source code |
| plotTernary.SingleCellExperiment | Man page Source code |
| plotTernary.default | Man page Source code |
| plotTernary.simMat | Man page Source code |
| print.quatPlot | Man page Source code |
| rankMatrix_dense | Source code |
| readH5ADObsNames | Man page Source code |
| readH5ADObsVar | Man page Source code |
| readH5ADUnsSpMat | Man page Source code |
| readVelocytoLoom | Man page Source code |
| rnaCluster | Man page |
| rnaRaw | Man page |
| rnaVelo | Man page |
| rotateByZAxis | Source code |
| rowAggregateSum | Source code |
| rowAggregateSum_dense | Source code |
| rowAggregateSum_sparse | Source code |
| rowNNZAggr_sparse | Source code |
| selectTopFeatures | Man page Source code |
| selectTopFeatures.Seurat | Man page Source code |
| selectTopFeatures.SingleCellExperiment | Man page Source code |
| selectTopFeatures.default | Man page Source code |
| wilcoxauc | Source code |
| writeQuaternaryGIF | Man page Source code |
