DAMOCLES: Dynamic Assembly Model of Colonization, Local Extinction and Speciation
Version 1.1

Simulates and computes (maximum) likelihood of a dynamical model of community assembly that takes into account phylogenetic history.

AuthorRampal S. Etienne & Alex L. Pigot
Date of publication2015-03-05 17:36:50
MaintainerRampal S. Etienne <r.s.etienne@rug.nl>
LicenseGPL-2
Version1.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("DAMOCLES")

Getting started

Package overview

Popular man pages

DAMOCLES_bootstrap: Phylogenetic community structure hypothesis test
DAMOCLES-internal: Internal DAMOCLES Functions
DAMOCLES_loglik: Likelihood for DAMOCLES model
DAMOCLES_ML: Maximization of the loglikelihood under the DAMOCLES model
DAMOCLES-package: Dynamic Assembly Model Of Colonization, Local Extinction and...
DAMOCLES_sim: Simulating DAMOCLES
NWPrimates_data: Dated phylogenetic tree of the New World Primates in nexus...
See all...

All man pages Function index File listing

Man pages

DAMOCLES_bootstrap: Phylogenetic community structure hypothesis test
DAMOCLES-internal: Internal DAMOCLES Functions
DAMOCLES_loglik: Likelihood for DAMOCLES model
DAMOCLES_ML: Maximization of the loglikelihood under the DAMOCLES model
DAMOCLES-package: Dynamic Assembly Model Of Colonization, Local Extinction and...
DAMOCLES_sim: Simulating DAMOCLES
NWPrimates_data: Dated phylogenetic tree of the New World Primates in nexus...

Functions

DAMOCLES Man page
DAMOCLES-package Man page
DAMOCLES_ML Man page Source code
DAMOCLES_bootstrap Man page Source code
DAMOCLES_integrate_ODE Man page Source code
DAMOCLES_loglik Man page Source code
DAMOCLES_loglik_choosepar Man page Source code
DAMOCLES_loglik_rhs Man page Source code
DAMOCLES_sim Man page Source code
DAMOCLES_simplex Man page Source code
NWPrimates_data Man page
compute_edgeTList Man page Source code
roundn Man page Source code
sample2 Man page Source code

Files

NAMESPACE
data
data/NWPrimates_data.RData
R
R/DAMOCLES_loglik.R
R/DAMOCLES_sim.R
R/DAMOCLES_ML.R
R/DAMOCLES_bootstrap.R
MD5
DESCRIPTION
man
man/DAMOCLES_sim.Rd
man/DAMOCLES_ML.Rd
man/DAMOCLES_bootstrap.Rd
man/DAMOCLES-package.Rd
man/DAMOCLES-internal.Rd
man/NWPrimates_data.Rd
man/DAMOCLES_loglik.Rd
DAMOCLES documentation built on May 20, 2017, 3:31 a.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.