DAMOCLES: Dynamic Assembly Model of Colonization, Local Extinction and Speciation

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Simulates and computes (maximum) likelihood of a dynamical model of community assembly that takes into account phylogenetic history.

Author
Rampal S. Etienne & Alex L. Pigot
Date of publication
2015-03-05 17:36:50
Maintainer
Rampal S. Etienne <r.s.etienne@rug.nl>
License
GPL-2
Version
1.1

View on CRAN

Man pages

DAMOCLES_bootstrap
Phylogenetic community structure hypothesis test
DAMOCLES-internal
Internal DAMOCLES Functions
DAMOCLES_loglik
Likelihood for DAMOCLES model
DAMOCLES_ML
Maximization of the loglikelihood under the DAMOCLES model
DAMOCLES-package
Dynamic Assembly Model Of Colonization, Local Extinction and...
DAMOCLES_sim
Simulating DAMOCLES
NWPrimates_data
Dated phylogenetic tree of the New World Primates in nexus...

Files in this package

DAMOCLES
DAMOCLES/NAMESPACE
DAMOCLES/data
DAMOCLES/data/NWPrimates_data.RData
DAMOCLES/R
DAMOCLES/R/DAMOCLES_loglik.R
DAMOCLES/R/DAMOCLES_sim.R
DAMOCLES/R/DAMOCLES_ML.R
DAMOCLES/R/DAMOCLES_bootstrap.R
DAMOCLES/MD5
DAMOCLES/DESCRIPTION
DAMOCLES/man
DAMOCLES/man/DAMOCLES_sim.Rd
DAMOCLES/man/DAMOCLES_ML.Rd
DAMOCLES/man/DAMOCLES_bootstrap.Rd
DAMOCLES/man/DAMOCLES-package.Rd
DAMOCLES/man/DAMOCLES-internal.Rd
DAMOCLES/man/NWPrimates_data.Rd
DAMOCLES/man/DAMOCLES_loglik.Rd