DDD-package: DDD: Diversity-Dependent Diversification

In DDD: Diversity-Dependent Diversification

DDD: Diversity-Dependent Diversification

Description

Implements maximum likelihood and bootstrap methods based on the diversity-dependent birth-death process to test whether speciation or extinction are diversity-dependent, under various models including various types of key innovations. See Etienne et al. 2012, Proc. Roy. Soc. B 279: 1300-1309, \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1098/rspb.2011.1439")}, Etienne & Haegeman 2012, Am. Nat. 180: E75-E89, \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1086/667574")}, Etienne et al. 2016. Meth. Ecol. Evol. 7: 1092-1099, \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1111/2041-210X.12565")} and Laudanno et al. 2021. Syst. Biol. 70: 389–407, \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1093/sysbio/syaa048")}. Also contains functions to simulate the diversity-dependent process.

Author(s)

Maintainer: Rampal S. Etienne [e-mail] (ORCID)

Authors:

• Bart Haegeman [e-mail] (ORCID)

Other contributors:

• Hanno Hildenbrandt [e-mail] (ORCID) [contributor]

• Giovanni Laudanno [e-mail] (ORCID) [contributor]

DDD documentation built on July 26, 2023, 5:25 p.m.