DEPsets | R Documentation |
extract two or more IDsets interesection set and complementary set and define the colors.
DEPsets(datalist, colors = c("red", "green", "blue"))
datalist |
a list contains more than two ID sets. |
colors |
define each ID sets color. |
a list contains interesection set and complementary set information and colors.
gene.set |
a list of each set ID information. |
color.code |
the colors of each set |
Kefu Liu
data(net) data(imputedData) Module <- Module_inf(net, imputedData$inf) group <- gsub("[0-9]+","", colnames(imputedData$intensity)) data <- imputedData data$inf <- data$inf[1:100,] data$intensity <- data$intensity[1:100,] stat <- dataStatInf(data, group, meanmethod = "median", T.test = "pairwise", Aadj = "fdr", Tadj = "fdr", cutoff = FALSE) stat <- rename_dupnewID(stat, Module, DEPfromMod = TRUE) stat1 <- stat$new.ID[stat$ad > 1] stat2 <- stat$new.ID[stat$asym > 1] datalist <- list(stat1 = stat1, stat2 = stat2) sets <- DEPsets(datalist)
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