ME_inf: module eigengenes information

In DDPNA: Disease-Drived Differential Proteins Co-Expression Network Analysis

module eigengenes information

Description

put sample names as rownames in WGCNA module eigenvalue data.frame.

Usage

ME_inf(MEs, data, intensity.type = "LFQ", rowname = NULL)

Arguments

MEs	module eigenvalue which is calculated in WGCNA package.
data	protein quantification data. column is sample. row is protein ID.
intensity.type	quantification data type, which can help extract sample name. This must be (an abbreviation of) one of the strings "LFQ","intensity","iBAQ","none".
rowname	sample names when "intensity.type" is "none", rowname will be used.

Author(s)

Kefu Liu

Examples

data(net)
data(imputedData)
data <- imputedData
logD <- data$log2_value
MEs <- ME_inf(net$MEs, logD)

DDPNA documentation built on May 17, 2022, 5:05 p.m.