perform_anova: Function for ANOVA One-Way Test

In DGEAR: Differential Gene Expression Analysis with R

Function for ANOVA One-Way Test

Description

Function for ANOVA One-Way Test

Usage

perform_anova(datafile, con, exp, alpha = 0.05)

Arguments

datafile	A matrix containing the gene expression data
con	A data frame or matrix containing the expression values for the control.
exp	A data frame or matrix containing the expression values for the experiment.
alpha	Value of significance level ranging from 0 to 1 (default = 0.05 states 5 % significance).

Value

A data frame containing values for statistic score, p-values etc for each gene being tested.

Examples

library(DGEAR)
data("gene_exp_data")
data = read_and_preprocess_data(datafile = gene_exp_data, con1=1,con2=10,exp1=11,exp2=20)
perform_anova(datafile = data$datafile, con= data$con, exp= data$exp)

DGEAR documentation built on June 27, 2024, 1:07 a.m.